Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq180 125 7e-24 seq380 122 9e-23 >seq180 Length=389120 Score = 125 bits (138), Expect = 7e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | || || | ||| || | || ||||| || ||||| ||||| || ||||||||| Sbjct 348152 GCCATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 348211 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 |||| | |||| | || |||||||| ||||| ||||| || | |||||||| || Sbjct 348212 TCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCA 348271 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || ||||| || || || || || || ||||| ||| | |||||||| || Sbjct 348272 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGAC 348331 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || || || || || || | || || |||||||| ||||| ||| Sbjct 348332 TCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 348388 >seq380 Length=1607400 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| ||||||||||| || Sbjct 982475 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAG 982416 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || |||||||| || ||||| || || || Sbjct 982415 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGA 982356 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 982355 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 982296 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| || || || ||||| || ||||| Sbjct 982295 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 982249 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || |||||||| ||||||||||||||| || Sbjct 982757 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 982698 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| ||||| || || || ||||| |||| |||||||| || || || Sbjct 982697 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 982638 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| ||| || || ||| | || |||||||| || || Sbjct 982637 ATACCCTCCTTATCTTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 982578 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || ||||| ||||| || || || | || || |||| Sbjct 982577 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 982541 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | |||||||| || || || ||||| || ||||||||||||| | |||| || Sbjct 983204 AGTCGTAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 983145 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || || || || | |||||||||||| || || || || || Sbjct 983144 CCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCC 983085 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | ||||| || || || || || || Sbjct 983084 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTG 983025 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||| || || ||||| ||||| Sbjct 983024 ATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 982987 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| ||||||||||||||| || || | || || || || Sbjct 982962 GTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTG 982903 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || | ||||| |||||||| || || || || || || || || || Sbjct 982902 CTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTT 982843 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || ||||| || || || || ||||||||||| || || || Sbjct 982842 GCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGT 982783 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 982782 GAGGGTCTTGACGAAGATTTGCAT 982759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505378525207920