Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1147 194 2e-44 seq2959 192 7e-44 seq2704 84.2 3e-11 >seq1147 Length=1368141 Score = 194 bits (214), Expect = 2e-44 Identities = 537/812 (66%), Gaps = 15/812 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 1256059 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 1256118 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || ||| | || | |||| | |||||||| Sbjct 1256119 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-CCAAGCGCGACAAGGAGACG 1256177 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| ||| || |||||||| |||| ||| ||| Sbjct 1256178 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACA 1256237 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| ||||||| || || || | ||| | || Sbjct 1256238 GGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATATCCTG 1256297 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | || | || ||| || |||||| || Sbjct 1256298 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 1256354 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||| ||||| |||||||| || || |||||| |||||| |||||||| Sbjct 1256355 AGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 1256414 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 1256415 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 1256474 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | ||||| |||| |||||||| ||||||||| | ||| | | ||| || Sbjct 1256475 AGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGAT 1256534 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | ||||| || ||| || |||| ||||| || || | |||||| | | Sbjct 1256535 GGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGT 1256594 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | || || || ||||| | || ||||| || || || ||| |||| Sbjct 1256595 TCGCTGGGCGGGCTCCTTTATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGAT 1256654 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 1256655 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTC-G 1256712 Query 130383 CTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 | | ||| | | || ||||| ||||| ||||| ||| |||| || || || Sbjct 1256713 CCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAAGAAAGCA 1256772 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGA 130498 ||||| | | ||| ||| |||| | ||| || | |||||||| | ||| Sbjct 1256773 AGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCATGGAGA 1256832 Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| || ||||| | |||||| |||||||| Sbjct 1256833 TCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 1256864 >seq2959 Length=1076507 Score = 192 bits (212), Expect = 7e-44 Identities = 1164/1842 (63%), Gaps = 43/1842 (2%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || || ||||| | Sbjct 631419 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTTTTGAGGC 631360 Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 | |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 631359 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 631301 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 631300 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 631241 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || | | ||| ||||| || ||| | || || ||| | ||| | ||||| Sbjct 631240 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 631181 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 631180 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 631121 Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 118163 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 631120 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 631061 Query 118164 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 118223 ||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| ||| Sbjct 631060 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 631001 Query 118224 AAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 118283 | || |||| || ||| || ||||| || || | ||| || |||||||||| || Sbjct 631000 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 630941 Query 118284 TTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | | | | | | | || || ||| |||||||| || | | || | | Sbjct 630940 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 630883 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| || |||||||||||||| | || || || || || | || || || | Sbjct 630882 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGG 630823 Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 | ||||| ||| |||| | ||||| || |||||| ||||| || || || | Sbjct 630822 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAAATGGTCT 630766 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517 | || || | || | | |||||| || || || | | || || | | Sbjct 630765 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCA 630707 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | || |||| || || || || ||||| || ||||| || || || | ||| ||| Sbjct 630706 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 630647 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || || || || ||| |||||| | | | || || || | Sbjct 630646 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTACGAATA 630587 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 118694 ||||||| ||| | || | ||| | | | || | || || ||| || | || Sbjct 630586 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 630530 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 | | || || || | || || || || || |||| | ||| || || | Sbjct 630529 ATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 630470 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| |||||||| ||||||| ||| || || ||||| || | ||||||||| || Sbjct 630469 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 630410 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| | Sbjct 630409 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 630350 Query 118875 TTGAGAATAGCCTTCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTT 118932 | ||||| || | ||| | | ||| || | | ||| || | ||||| | Sbjct 630349 TCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG-ACCCTTG-CCCTCCT 630292 Query 118933 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992 |||||||||| ||| || || || ||||| || || | || | ||| || || Sbjct 630291 TCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGC 630232 Query 118993 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052 || | ||||| | || | ||| | || || ||||| ||||||||||| || | Sbjct 630231 ACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGAT 630172 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | |||||||| || || ||| || || || || | || || | || || || Sbjct 630171 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCT 630112 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 ||| | || | || || | || ||| | |||||| || || ||||| | || | | Sbjct 630111 TACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 630052 Query 119173 -AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226 || | ||| | | ||| |||||| ||||| | |||||| ||| || |||| Sbjct 630051 CACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 629995 Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATT 119284 ||||||| |||| | ||| | ||| || || || || ||| || ||| | | | Sbjct 629994 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCC--AGT 629937 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 || | || | ||| | || || ||||||||| || ||| ||| ||||| || || Sbjct 629936 AGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 629877 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | ||||| | ||||||| || || || ||| |||| | | | | |||||| Sbjct 629876 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCA 629817 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||| ||| ||| || || || ||||||||||| || || | || || |||| Sbjct 629816 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAA 629757 Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCCCGTG 119521 | | || ||||||| || ||| ||||||||||| || | || || || || Sbjct 629756 GAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG-ATATCATCACCCCA 629700 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 119581 |||||| | || || ||||| | ||||| || || || | | |||| || | Sbjct 629699 AATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAAT 629640 Query 119582 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | ||||||| |||||| ||||||| ||||| || Sbjct 629639 CTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 629598 >seq2704 Length=710760 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 492279 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 492338 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || || ||| |||| || ||| | | || | |||||||||||| Sbjct 492339 GGAACCCGCCAACAGATGTCCGAAGATAAGCTCAGGAATGTAGATCTTCTCCTTTTCGTG 492398 Query 180999 CATA 181002 ||| Sbjct 492399 AATA 492402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618410880035760