Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_
202017-07-27] 3,146 sequences; 56,132,059 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2959 259 6e-64
seq1147 147 3e-30
seq2926 87.8 2e-12
>seq2959
Length=1076507
Score = 259 bits (286), Expect = 6e-64
Identities = 1143/1783 (64%), Gaps = 41/1783 (2%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| ||||| ||||||| ||| | | |||||| || || || || || ||
Sbjct 629663 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 629722
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 104338
||||||||||||| || ||||||| || | | |||| || || | || || |||
Sbjct 629723 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCCTCTCCCACGCTC 629780
Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||||| || || || || |||||| |||| ||||||| | | | | |||||
Sbjct 629781 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 629840
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||| || | || ||||| | ||||| | | ||||| ||||| ||| ||||
Sbjct 629841 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 629900
Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 104516
|| |||||||| || || | || | | | || | | ||| || ||| || |
Sbjct 629901 GGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGG--CTCCTACATCGCCGGTA 629958
Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576
| || ||| ||| | ||| || |||| |||||||| || || ||| ||| || ||||
Sbjct 629959 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCT 630018
Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|||| | || | ||| ||| || || | || |||| || ||||| ||||
Sbjct 630019 ATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGC 630078
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|| | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| ||
Sbjct 630079 ACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTG 630138
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| ||| || ||||| || ||||| ||||||||| | ||||| |||
Sbjct 630139 CCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGA 630198
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813
||| | ||| | || | || || || || ||||| ||| |||| | || |
Sbjct 630199 ACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAG 630258
Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871
||||||| || || || ||| ||||||||| |||| ||| | | | | || ||| |
Sbjct 630259 AGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT 630316
Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931
||| | | ||| | || ||||| || | || || ||||| || | ||||
Sbjct 630317 CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATT 630376
Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991
|||||| ||||| || ||||| |||| ||||| || |||||||| | ||| |||
Sbjct 630377 CATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCG 630436
Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051
|| ||||| || || || ||||| | || | | | || ||| ||||| ||
Sbjct 630437 AAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTG 630496
Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT----- 105106
||||| || || | ||||| ||| | | | || || || | || ||
Sbjct 630497 CAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCTAC 630551
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
|| | | || | ||| | || | | ||| | ||||| |||| | ||
Sbjct 630552 GACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGTAACCTGAACAAGATCATC 630611
Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| || ||||| || || ||||| || ||| ||| | ||||| || |||
Sbjct 630612 GATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCATT 630671
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285
||||| ||||||||||| || || |||| ||| || || || ||| | || || ||
Sbjct 630672 GGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGAGTC 630730
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345
||| || || |||| || || || |||||||| || ||||| || ||
Sbjct 630731 ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCAC 630790
Query 105346 GGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403
|| || | || |||| ||| || ||||| || ||||| | ||||| ||
Sbjct 630791 TGCCTCCGTGC--AGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCC 630848
Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463
|| || | || | || || || || |||||| | | || || | || |||
Sbjct 630849 GCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGAC 630908
Query 105464 TGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521
||||| ||| || || | | | ||||| | || | ||||||||||| ||| | |
Sbjct 630909 TGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCTCCTTG 630966
Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581
|||| ||||| || ||| ||| | || || |||| || || || ||||| || ||||
Sbjct 630967 CTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCT 631026
Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641
|||| | |||||||| | || | ||||| || ||||| | ||||||||
Sbjct 631027 ACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCT 631086
Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701
|| | | ||||| || || ||||| |||||| | | ||||||| | | |||
Sbjct 631087 GGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCA 631146
Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761
| | | |||||||||||| || ||| | || || || | ||| |||
Sbjct 631147 TTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGT 631206
Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821
| || |||||||| ||| | | ||| || | ||||| || ||||| |||
Sbjct 631207 ATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGTG 631266
Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879
||||||||||| |||| ||| |||| || |||| | || |||||| |||
Sbjct 631267 CCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATGGGCAA 631324
Query 105880 GCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 105938
| || | ||||||| | | || | |||||| || |||||||| || ||||| ||||
Sbjct 631325 GATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAAACTGGCATGTACTACC 631383
Query 105939 TCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981
| || | |||| || || |||||||||| | ||||
Sbjct 631384 TTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 631426
>seq1147
Length=1368141
Score = 147 bits (162), Expect = 3e-30
Identities = 180/243 (74%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773
|||||| | ||||| | || | || || || | |||||| || || ||||| ||
Sbjct 1256588 CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGA 1256529
Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832
||| | | | || | | | | ||||||| |||| ||| | || || || ||||||
Sbjct 1256528 TGGATCCAGGATAAGGACTCCT-CCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGTTGA 1256470
Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892
||||||||||||| |||| ||||| | |||| | |||||||||||||| ||||||||
Sbjct 1256469 GGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 1256410
Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952
||| ||||| ||||||||||||||| ||||||||||| ||||| || ||| || ||
Sbjct 1256409 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTT 1256350
Query 94953 TGC 94955
|||
Sbjct 1256349 TGC 1256347
>seq2926
Length=362871
Score = 87.8 bits (96), Expect = 2e-12
Identities = 181/267 (68%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817
||||| || || || ||||||||||| || ||||| || ||||| |||| | || |
Sbjct 10125 AAGAGCTCACGGACTCGCTTGGCGCCAACGCCAACGAATATCTCGTCAAA-CTCGCTACC 10183
Query 9818 GAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876
|||| | || ||||| ||| | ||| || |||| ||||| || ||||| |||||
Sbjct 10184 AGACATGTAGAAAAAGGGAACACCGGCTTCGCCGGCAACAGCTCGAGCAAGAAGCGTCTT 10243
Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 9936
||| ||||| || ||| | |||||| | || || | || || ||| |
Sbjct 10244 ACCAGTACCAGGAGGACCAACCAGGAGGACGCCCTTGGGCAGTTTAGCACCAAGATCGCT 10303
Query 9937 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTC 9996
| | | || || | ||| ||||| || |||| ||||| | ||| |||||||| | ||
Sbjct 10304 GAACTTTTCGGGATTCTTCAGAAACTCTACAACTTCTTGGAGTTCCTCTTTGGCTTCATC 10363
Query 9997 AATCCCCTCAACATCGGTAAACCGGGT 10023
| || | ||||||| | ||||| ||
Sbjct 10364 ACAACCGTGAACATCGCTGAACCGAGT 10390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583237863269040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |