Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2959 259 6e-64 seq1147 147 3e-30 seq2926 87.8 2e-12 >seq2959 Length=1076507 Score = 259 bits (286), Expect = 6e-64 Identities = 1143/1783 (64%), Gaps = 41/1783 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| ||| | | |||||| || || || || || || Sbjct 629663 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 629722 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||||| || | | |||| || || | || || ||| Sbjct 629723 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCCTCTCCCACGCTC 629780 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || || || || |||||| |||| ||||||| | | | | ||||| Sbjct 629781 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 629840 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 629841 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 629900 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 104516 || |||||||| || || | || | | | || | | ||| || ||| || | Sbjct 629901 GGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGG--CTCCTACATCGCCGGTA 629958 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || ||| ||| | ||| || |||| |||||||| || || ||| ||| || |||| Sbjct 629959 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCT 630018 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | || | ||| ||| || || | || |||| || ||||| |||| Sbjct 630019 ATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGC 630078 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| || Sbjct 630079 ACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTG 630138 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || || ||| ||| || ||||| || ||||| ||||||||| | ||||| ||| Sbjct 630139 CCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGA 630198 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 ||| | ||| | || | || || || || ||||| ||| |||| | || | Sbjct 630199 ACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAG 630258 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871 ||||||| || || || ||| ||||||||| |||| ||| | | | | || ||| | Sbjct 630259 AGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT 630316 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 ||| | | ||| | || ||||| || | || || ||||| || | |||| Sbjct 630317 CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATT 630376 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||| ||||| || ||||| |||| ||||| || |||||||| | ||| ||| Sbjct 630377 CATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCG 630436 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 || ||||| || || || ||||| | || | | | || ||| ||||| || Sbjct 630437 AAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTG 630496 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT----- 105106 ||||| || || | ||||| ||| | | | || || || | || || Sbjct 630497 CAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCTAC 630551 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | | || | ||| | || | | ||| | ||||| |||| | || Sbjct 630552 GACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGTAACCTGAACAAGATCATC 630611 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || ||||| || || ||||| || ||| ||| | ||||| || ||| Sbjct 630612 GATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCATT 630671 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285 ||||| ||||||||||| || || |||| ||| || || || ||| | || || || Sbjct 630672 GGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGAGTC 630730 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 ||| || || |||| || || || |||||||| || ||||| || || Sbjct 630731 ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCAC 630790 Query 105346 GGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 || || | || |||| ||| || ||||| || ||||| | ||||| || Sbjct 630791 TGCCTCCGTGC--AGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCC 630848 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463 || || | || | || || || || |||||| | | || || | || ||| Sbjct 630849 GCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGAC 630908 Query 105464 TGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||||| ||| || || | | | ||||| | || | ||||||||||| ||| | | Sbjct 630909 TGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCTCCTTG 630966 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||| ||| | || || |||| || || || ||||| || |||| Sbjct 630967 CTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCT 631026 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 |||| | |||||||| | || | ||||| || ||||| | |||||||| Sbjct 631027 ACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCT 631086 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701 || | | ||||| || || ||||| |||||| | | ||||||| | | ||| Sbjct 631087 GGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCA 631146 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 | | | |||||||||||| || ||| | || || || | ||| ||| Sbjct 631147 TTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGT 631206 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 | || |||||||| ||| | | ||| || | ||||| || ||||| ||| Sbjct 631207 ATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGTG 631266 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 ||||||||||| |||| ||| |||| || |||| | || |||||| ||| Sbjct 631267 CCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATGGGCAA 631324 Query 105880 GCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 105938 | || | ||||||| | | || | |||||| || |||||||| || ||||| |||| Sbjct 631325 GATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAAACTGGCATGTACTACC 631383 Query 105939 TCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981 | || | |||| || || |||||||||| | |||| Sbjct 631384 TTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 631426 >seq1147 Length=1368141 Score = 147 bits (162), Expect = 3e-30 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 |||||| | ||||| | || | || || || | |||||| || || ||||| || Sbjct 1256588 CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGA 1256529 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | | || | | | | ||||||| |||| ||| | || || || |||||| Sbjct 1256528 TGGATCCAGGATAAGGACTCCT-CCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGTTGA 1256470 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 ||||||||||||| |||| ||||| | |||| | |||||||||||||| |||||||| Sbjct 1256469 GGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 1256410 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 ||| ||||| ||||||||||||||| ||||||||||| ||||| || ||| || || Sbjct 1256409 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTT 1256350 Query 94953 TGC 94955 ||| Sbjct 1256349 TGC 1256347 >seq2926 Length=362871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 ||||| || || || ||||||||||| || ||||| || ||||| |||| | || | Sbjct 10125 AAGAGCTCACGGACTCGCTTGGCGCCAACGCCAACGAATATCTCGTCAAA-CTCGCTACC 10183 Query 9818 GAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 |||| | || ||||| ||| | ||| || |||| ||||| || ||||| ||||| Sbjct 10184 AGACATGTAGAAAAAGGGAACACCGGCTTCGCCGGCAACAGCTCGAGCAAGAAGCGTCTT 10243 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 9936 ||| ||||| || ||| | |||||| | || || | || || ||| | Sbjct 10244 ACCAGTACCAGGAGGACCAACCAGGAGGACGCCCTTGGGCAGTTTAGCACCAAGATCGCT 10303 Query 9937 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTC 9996 | | | || || | ||| ||||| || |||| ||||| | ||| |||||||| | || Sbjct 10304 GAACTTTTCGGGATTCTTCAGAAACTCTACAACTTCTTGGAGTTCCTCTTTGGCTTCATC 10363 Query 9997 AATCCCCTCAACATCGGTAAACCGGGT 10023 | || | ||||||| | ||||| || Sbjct 10364 ACAACCGTGAACATCGCTGAACCGAGT 10390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583237863269040