Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq1030 131 4e-25
seq588 89.7 1e-12
>seq1030
Length=250146
Score = 131 bits (144), Expect = 4e-25
Identities = 161/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGG 230473
|||||||| | ||| ||| | || ||| |||| | |||||||| |||| || |||
Sbjct 123999 AGGAGTTCCTCACTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGAATTCTGACCTCATGA 124058
Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533
||||| || || ||||| ||||| || | | || || ||||| ||||||| || |
Sbjct 124059 AGCAGTATATTGAGTTCGTCGCCGATCGTCTCCTCGTCGCTCTTGGCAACGAGAAGGTCT 124118
Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593
|||| ||| |||||||||| || |||||| ||| || ||| || ||||||||||
Sbjct 124119 ACAAGGCTAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 124178
Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633
||||||| |||||||| ||||| |||| | | |||||
Sbjct 124179 TCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGT 124218
>seq588
Length=1325811
Score = 89.7 bits (98), Expect = 1e-12
Identities = 172/251 (69%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 319781 AGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 319840
|||| || ||| | | | || ||||| |||||| ||||| || ||| | |||| |
Sbjct 272347 AGTCGATAGTAGTCATCTCAGTATCGGCGGAGTCGAGGTCGTGCTCGACGAAGACAGTCT 272406
Query 319841 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGG 319899
| | || || || |||| | |||| ||| ||| |||| || |||||||| |||
Sbjct 272407 TGACCTCACTCTGCTTAGGGAAGCCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGG 272465
Query 319900 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTG 319959
|| || || || | ||||| || ||||| |||||||| || | || || || || |
Sbjct 272466 GTGGACTTTCCGGAACCGTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGG 272525
Query 319960 AACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 320019
| | || | ||| |||||||| || |||| || || ||||| || ||| | ||
Sbjct 272526 AGATGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 272585
Query 320020 AGATCCTCACC 320030
|||||||||||
Sbjct 272586 AGATCCTCACC 272596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057801894453530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |