Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1030 131 4e-25 seq588 89.7 1e-12 >seq1030 Length=250146 Score = 131 bits (144), Expect = 4e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGG 230473 |||||||| | ||| ||| | || ||| |||| | |||||||| |||| || ||| Sbjct 123999 AGGAGTTCCTCACTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGAATTCTGACCTCATGA 124058 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 ||||| || || ||||| ||||| || | | || || ||||| ||||||| || | Sbjct 124059 AGCAGTATATTGAGTTCGTCGCCGATCGTCTCCTCGTCGCTCTTGGCAACGAGAAGGTCT 124118 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 |||| ||| |||||||||| || |||||| ||| || ||| || |||||||||| Sbjct 124119 ACAAGGCTAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 124178 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 ||||||| |||||||| ||||| |||| | | ||||| Sbjct 124179 TCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGT 124218 >seq588 Length=1325811 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 319781 AGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 319840 |||| || ||| | | | || ||||| |||||| ||||| || ||| | |||| | Sbjct 272347 AGTCGATAGTAGTCATCTCAGTATCGGCGGAGTCGAGGTCGTGCTCGACGAAGACAGTCT 272406 Query 319841 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGG 319899 | | || || || |||| | |||| ||| ||| |||| || |||||||| ||| Sbjct 272407 TGACCTCACTCTGCTTAGGGAAGCCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGG 272465 Query 319900 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTG 319959 || || || || | ||||| || ||||| |||||||| || | || || || || | Sbjct 272466 GTGGACTTTCCGGAACCGTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGG 272525 Query 319960 AACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 320019 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 272526 AGATGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 272585 Query 320020 AGATCCTCACC 320030 ||||||||||| Sbjct 272586 AGATCCTCACC 272596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057801894453530