Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1030 269 3e-67
seq1496 152 5e-32
seq486 132 5e-26
seq1259 123 3e-23
>seq1030
Length=250146
Score = 269 bits (298), Expect = 3e-67
Identities = 551/809 (68%), Gaps = 16/809 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||| | ||||||| | || ||
Sbjct 123362 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 123421
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| ||| | | | |||| ||| ||
Sbjct 123422 TCCAAGGATCTCCA-CGACTGGAACAATCGCCTGACTGCCGATGAGCAGTTCTTCGTCTC 123480
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| ||||| ||| || || || ||||||||||| || || |||||
Sbjct 123481 TCACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAGCG 123540
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | ||||| ||| | ||||||| || |||||||||||||| |||||| ||
Sbjct 123541 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 123600
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927
||||||| | || || || | || || ||||| ||||| ||| | | || |
Sbjct 123601 GGAGAACATCCATTCCGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGAGCCCGC 123660
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | ||| || | | | | |||||||| ||||| || || ||| || | ||||||
Sbjct 123661 CCA--GCGAACCTACCTCT--TCAACGCCATTGAGACCATTCCTTGCATCCGAAAGAAGG 123716
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
|||| ||||| | || |||||| | | || || |||| | | |||| || || |
Sbjct 123717 CCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 123776
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
||||||| || || ||||| ||||||| || || ||| | || || |||||||
Sbjct 123777 CCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCA 123836
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || || ||||||||||||||||| ||| ||||||||||||||| | || ||||
Sbjct 123837 AGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 123896
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
|||| || ||||||||||| | || | || | | || | ||| |
Sbjct 123897 GTCTCCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTTAAGGGTCGTGCCAGCAAGC 123956
Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287
| || ||| ||| |||| || || ||| |||| |||||| |||||||| || |
Sbjct 123957 AGATGATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGG 124016
Query 117288 CGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346
| || || |||| || || || | |||| || ||| ||| || || ||||||
Sbjct 124017 CTCTCCCCTGTGC-CCTTCTCGGCATGAATTCTGACCTCATGAAGCAGTATATTGAGTTC 124075
Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406
|||||||| | || || ||| || | | || ||| |||||| | ||||||
Sbjct 124076 GTCGCCGATCGTCTCCTCGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCTAGCAACCCC 124135
Query 117407 CTGGACTTTATGAACCTCATCT-CCTTGG 117434
| ||||| ||| | ||||| ||||||
Sbjct 124136 TTTGACTTCATGGAGAACATCTCCCTTGG 124164
>seq1496
Length=1355525
Score = 152 bits (168), Expect = 5e-32
Identities = 163/213 (77%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || |||||||| || || |||||| | || || || |
Sbjct 510505 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 510564
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| || || | ||||| |||||||||||| | ||
Sbjct 510565 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 510623
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| |||||||||| || ||||| ||||| || || | |||||||| | ||||||
Sbjct 510624 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 510683
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||||||| |||| || || || ||
Sbjct 510684 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 510716
>seq486
Length=637844
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || || |||||| | || ||||| |||
Sbjct 82801 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACGATCACCCTTGAGGTCGAGTCCAGT 82742
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || |||| ||||| ||||| |||||| | || ||
Sbjct 82741 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCA 82683
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| ||| || || |||||||| || | |||||||| | |||||||||
Sbjct 82682 GCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACAA 82623
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 82622 CATCCAGAAGGAGTCAACTCTCCACCTCGT 82593
Score = 123 bits (136), Expect = 3e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| |||||||| |||| || || | ||
Sbjct 83539 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 83480
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || |||| ||||| |||||||||||| | || ||
Sbjct 83479 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 83421
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | || | ||| ||||||||||| || |||| ||||||||| || |||||
Sbjct 83420 GCAACGTTTGATTTTCGCCGGCAAACAGCTTGAGGACGGCCGCACCCTCTCTGATTACAA 83361
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| | || || || || ||
Sbjct 83360 CATTCAGAAGGAGTCTACTCTTCACCTTGT 83331
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
||| |||| || || ||||| |||||||| ||||| |||| || || | |||| | |
Sbjct 83251 ATAGTCGTCAAGACACTCACTGGCAAAACTATCACTCTCGAGGTTGAGTCATCCGATACC 83192
Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815
| | | ||||| ||| || | ||||| ||||| ||||| | || ||||| ||
Sbjct 83191 ATCGACAATGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGC 83132
Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875
|| |||| || ||||| || || || |||| || |||||| |||||||||||| |||
Sbjct 83131 CTGATCTTTGCTGGCAAGCAACTTGAGGACGGCCGAACCCTCGCCGACTACAACATTCAG 83072
Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898
||||| | || || ||||| ||
Sbjct 83071 AAGGAATCTACCCTTCATCTCGT 83049
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || ||||| || | || ||||| | ||
Sbjct 83029 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 82970
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || |||| ||||| ||||| || || | || ||
Sbjct 82969 GATACCATTGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATCAA 82910
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| |||||||||| ||| ||||| || || || |||| || || || ||||||||||
Sbjct 82909 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAAC 82850
Query 40870 ATCCAGAAGGA 40880
|||||||||||
Sbjct 82849 ATCCAGAAGGA 82839
>seq1259
Length=620669
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 152542 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 152483
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| ||||||| || |||||
Sbjct 152482 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 152423
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || ||||| || || | || || ||| |||||||||||||||||||
Sbjct 152422 ATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 152363
Query 40879 G 40879
|
Sbjct 152362 G 152362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515208695968560
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