Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq822 93.3 9e-14 seq1070 86.0 1e-11 >seq822 Length=1165972 Score = 93.3 bits (102), Expect = 9e-14 Identities = 169/245 (69%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| ||| |||| ||| | | ||||| | ||| | | ||||| ||||| || Sbjct 796416 TGGACTCCGCCATTGTCTATGACCGCGATTTCCAATACCAATACTTTGGCTTCAAGACTT 796475 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 ||||| ||| || |||||||| ||||| || ||||| || || || |||||| ||| Sbjct 796476 TGGAGCGATCCTACCTCCTCAAGATTGACGGTAAGATTGTCGAGCGGCCTCAGCATATGA 796535 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC---ATAGAGAGCGTGCTCGAGACGT 248959 | ||||| ||| |||| || || | || |||| || ||| | || | ||||| | Sbjct 796536 TCATGCGTGTGTCTGTTGGTAT---CTGGGGTGACGATATCGAGCGAGTCTTGGAGACAT 796592 Query 248960 ACACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCG 249016 ||| | ||| || || || | ||||||||| | || || ||||||||||| | Sbjct 796593 ACAACCTGATGTCCAGCAAATTCT---TTACACATGCCTCTCCCACACTCTTCAACGCTG 796649 Query 249017 GTACC 249021 ||||| Sbjct 796650 GTACC 796654 >seq1070 Length=1195525 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || || ||||||||| || | ||||| |||||||| ||| ||||||| ||||| || Sbjct 247412 TGCCCTCCTTTCAAGATCATCATCCTCGACGAGGCCGACTCCATGACACAAGACGCCCAA 247353 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 || || || ||||| ||||| || || | | || || ||||| ||| | ||| Sbjct 247352 AGTGCACTACGACGAACCATGGAAACATACAGCAAGATTACTCGATTTTGTCTGATTTGC 247293 Query 254322 AACTACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||||| |||| || |||| |||||| || ||| ||| ||| ||||| |||| Sbjct 247292 AACTACGTCACTCGA--ATTATCGACCCGCTTGCCAGTCGATGCAGCAAATTTCGGTTCA 247235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073743961302208