Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1496 111 1e-19 seq486 98.7 8e-16 seq1259 89.7 4e-13 >seq1496 Length=1355525 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| |||| ||| | || || Sbjct 510716 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 510657 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | |||||||||||| Sbjct 510656 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 510597 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 510596 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 510537 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || || || ||||| |||||| Sbjct 510536 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 510501 >seq486 Length=637844 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| |||| |||| | || ||||| || || || ||||| Sbjct 82610 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAA 82669 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || || || || || | ||||||||||||| ||| || ||| || Sbjct 82670 GATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 82729 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||| ||||| | ||| |||||||| || || |||||||| || Sbjct 82730 GTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTTCCGGTGAGAGTCTTGAC 82789 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 82790 GAAAATCTGCAT 82801 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| |||||||||||| || || |||| || Sbjct 82821 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCA 82880 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| || | |||||||| |||||||| | |||||||||||| | Sbjct 82881 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTGA 82940 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || ||| || |||| ||||| ||||| Sbjct 82941 ATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTT 83000 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||||||||| Sbjct 83001 CCAGTGAGGGTCTTGACGAAGATTTGCAT 83029 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || ||| |||| || || ||||| |||||||| Sbjct 83348 CTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAA 83407 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| || || || ||||| || | |||||||||||| ||| || ||| || Sbjct 83408 AATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 83467 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||| ||||| | || || |||||||| |||| ||||| || Sbjct 83468 GTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGAC 83527 Query 45325 AAAGATTTGCATGTTG 45340 ||||| |||||| || Sbjct 83528 GAAGATCTGCATGATG 83543 >seq1259 Length=620669 Score = 89.7 bits (98), Expect = 4e-13 Identities = 131/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||| |||||||||||| || | ||| ||| ||| || || || || |||| Sbjct 152362 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCG---AGCTGCTTACCAGCGA 152418 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | |||| ||||||||||| || || | |||||||||||| || || ||| || Sbjct 152419 AGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 152478 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | ||||| ||| ||||| | ||| || |||||||||||||| ||||||| Sbjct 152479 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 152538 Query 45324 CAAA 45327 | || Sbjct 152539 CGAA 152542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067346769251