Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1496 111 1e-19
seq486 98.7 8e-16
seq1259 89.7 4e-13
>seq1496
Length=1355525
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| |||||||||||| |||| ||| | || ||
Sbjct 510716 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 510657
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| ||||| || || | ||||||||||||
Sbjct 510656 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 510597
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| ||||||||
Sbjct 510596 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 510537
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || || || ||||| ||||||
Sbjct 510536 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 510501
>seq486
Length=637844
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| |||| |||| | || ||||| || || || |||||
Sbjct 82610 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAA 82669
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | || || || || || || | ||||||||||||| ||| || ||| ||
Sbjct 82670 GATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 82729
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| | ||| ||||| | ||| |||||||| || || |||||||| ||
Sbjct 82730 GTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTTCCGGTGAGAGTCTTGAC 82789
Query 45325 AAAGATTTGCAT 45336
|| || |||||
Sbjct 82790 GAAAATCTGCAT 82801
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||| |||||||||||| || || |||| ||
Sbjct 82821 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCA 82880
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || || ||||| || | |||||||| |||||||| | |||||||||||| |
Sbjct 82881 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTGA 82940
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || ||| || |||| ||||| |||||
Sbjct 82941 ATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTT 83000
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || ||||| || |||||||||||
Sbjct 83001 CCAGTGAGGGTCTTGACGAAGATTTGCAT 83029
Score = 96.9 bits (106), Expect = 3e-15
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||||||||||||||| || || ||| |||| || || ||||| ||||||||
Sbjct 83348 CTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAA 83407
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| || || || ||||| || | |||||||||||| ||| || ||| ||
Sbjct 83408 AATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 83467
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| | ||| ||||| | || || |||||||| |||| ||||| ||
Sbjct 83468 GTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGAC 83527
Query 45325 AAAGATTTGCATGTTG 45340
||||| |||||| ||
Sbjct 83528 GAAGATCTGCATGATG 83543
>seq1259
Length=620669
Score = 89.7 bits (98), Expect = 4e-13
Identities = 131/184 (71%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203
||||||| |||||||||||| || | ||| ||| ||| || || || || ||||
Sbjct 152362 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCG---AGCTGCTTACCAGCGA 152418
Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263
| |||| ||||||||||| || || | |||||||||||| || || ||| ||
Sbjct 152419 AGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 152478
Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | ||||| ||| ||||| | ||| || |||||||||||||| |||||||
Sbjct 152479 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 152538
Query 45324 CAAA 45327
| ||
Sbjct 152539 CGAA 152542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395067346769251
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