Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq822 311 8e-80 seq1030 167 2e-36 seq1496 107 2e-18 >seq822 Length=1165972 Score = 311 bits (344), Expect = 8e-80 Identities = 643/954 (67%), Gaps = 2/954 (0%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || |||||||| || ||||| | |||||| || || Sbjct 797367 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCAC 797308 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || || || || ||||| | || | |||||||| || || || || | |||| Sbjct 797307 AGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCC 797248 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 797247 TTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAGC 797188 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | | ||| || ||| ||| || | |||||| |||| ||| | || Sbjct 797187 TTCTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGC 797129 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || ||||||| |||||||| ||||| || | | | || ||||| || | Sbjct 797128 CTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGT 797069 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || |||||||| || ||||||||||||| || ||||| || ||| ||| Sbjct 797068 CCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAA 797009 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 ||| || ||||| || |||||||| || ||| ||||||| | ||| | || || || Sbjct 797008 CAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAATTCGAA 796949 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 || || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| || Sbjct 796948 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 796889 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||||||||| || || || ||||||||| | || | ||||| || || | |||||||| Sbjct 796888 CTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTTGGA 796829 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || || | || || | || |||| ||| |||| | ||| Sbjct 796828 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCACGTTCAGACC 796769 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || ||||| || || || ||||| || || || ||||| |||||||||||||| Sbjct 796768 AATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTC 796709 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 || ||||| || || | |||||||||| || || |||| ||| | | || ||| | Sbjct 796708 AATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTACC 796649 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 || ||| ||||| || ||| || |||||| || | ||||| || ||||| || Sbjct 796648 AGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCAGGTTGTATGT 796589 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | || || || || || ||||| | | || ||||| ||||| | Sbjct 796588 CTCCAAGACTCGCTCGATATCGTCACCCCAGATACCAACAGACACACGCATGATCATATG 796529 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 ||||| | |||||| | |||| ||| |||| || || || || | || || || Sbjct 796528 CTGAGGCCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGCTCCAAAGTCTT 796469 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || ||||| || | || | || || || || | || ||||| || | ||| Sbjct 796468 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCGGAGTCCAA 796415 >seq1030 Length=250146 Score = 167 bits (184), Expect = 2e-36 Identities = 550/840 (65%), Gaps = 29/840 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | ||| || | || || Sbjct 123362 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 123421 Query 57630 TCTAAGGATCTGAGCGATTGGGAT--TC-CCTCAAAGAATCTGA-GAGAAATTTTA--TT 57683 || |||||||| ||| ||| | || ||| | | | || ||| | || | | Sbjct 123422 TCCAAGGATCTCCACGACTGGAACAATCGCCTGACTG---CCGATGAGCAGTTCTTCGTC 123478 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | | || || ||||| || || ||||||||||| |||||||| | || || Sbjct 123479 TCTCACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAG 123538 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 |||| || || || | | ||||| | ||||| ||||| || || | Sbjct 123539 CGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATG 123598 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | ||||| || | || || || ||||| || || ||| | ||||| | Sbjct 123599 ATGGAGAACATCCATTCCGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGAGCCC 123658 Query 57864 GACGAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | | || ||| || || |||||||| || || || || || ||| |||||||| Sbjct 123659 GCCCAGCGAACCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGAAGGC 123717 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAAT 57979 || ||| | ||| |||||| | | | || || | || ||| || | || | Sbjct 123718 CGACTGGGCCATCCGATGGATCCAG---GATAAGGACTCCTCCTTTGCCCAGCGTCTCGT 123774 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || ||||| || || || ||||| ||||| || |||||| | || || ||| | Sbjct 123775 TGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCT 123834 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || || || |||||||||||||| || ||||||| | || || || || || Sbjct 123835 CAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGA 123894 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT----GTCAATAAACCGA 58155 ||||||||| ||||| ||||| ||||| | |||||||| || ||| | | | Sbjct 123895 GGGTCTCCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTTAAGGGTCGTGCCAGC-A 123953 Query 58156 CGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 || ||| ||| |||||| ||||| || || ||| | || || | ||||| ||| Sbjct 123954 AGC-AGAT--GATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCA 124010 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 | || || || || ||| | ||||| ||||| ||| | ||| |||| |||| Sbjct 124011 CTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGAATTCTGACCTCATGAAGCAGTATATTG 124070 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAA 58333 |||| || ||||| | || | ||| || | |||| ||| ||||| | | Sbjct 124071 AGTTCGTCGCCGATCGTCTCCTCGTCGCTCTTGGCAACGAGAAGGTC--TACAAGGCTAG 124128 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || ||||| || ||| | ||||| || | |||||||| ||||| ||||| || Sbjct 124129 CAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAA 124188 >seq1496 Length=1355525 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 510505 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 510564 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 510565 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 510624 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||||| || || || |||||||| ||| | || || | | | || ||||||| || Sbjct 510625 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA-TGGACGCACCCTGAGCGACTA 510683 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 510684 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 510719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757311937520