Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq822 208 1e-48 >seq822 Length=1165972 Score = 208 bits (230), Expect = 1e-48 Identities = 629/959 (66%), Gaps = 18/959 (2%) Strand=Plus/Minus Query 65741 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 65800 ||| || || || || || || ||||| | || | ||| | || || |||||||| Sbjct 797368 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCA 797309 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 || ||| || |||||| || | || | ||| || ||||| |||||| ||||| Sbjct 797308 CAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 797249 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920 ||| || || ||||| || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 797248 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 797190 Query 65921 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGT--GTATA 65974 | || ||||||| || || ||| | ||| | ||| |||||| | ||| | Sbjct 797189 GCTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTCGTATTTTTCGTAAA 797133 Query 65975 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACAT 66034 | | |||||||| || || | | | | | ||||| || || | || ||||| Sbjct 797132 GAGCC--TCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACAT 797075 Query 66035 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 66094 || | ||| || |||| | | || || |||||||| |||||||| |||||||| || Sbjct 797074 CAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGC 797015 Query 66095 TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154 | || | || | || | ||||| || || |||||| ||||| ||||| Sbjct 797014 GAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAA 796955 Query 66155 CGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 66214 | | | |||| | ||||| || || | ||| ||||| | | | || || || ||||| Sbjct 796954 TTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTT 796895 Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 || |||||||| | || | ||| ||||| || | || | | ||| |||| || || Sbjct 796894 GCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCC 796835 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATA--TTACTAATT 66332 ||||||||||| ||||| |||| ||| ||| ||| | ||||||||| | | || Sbjct 796834 GTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCACGTT 796775 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 66392 ||||| || || || ||||| || ||||| | || || || | ||||| ||| Sbjct 796774 --CAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAG 796717 Query 66393 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 |||||||| ||||| || ||| |||| | | | || || |||| |||| | || Sbjct 796716 ATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGA 796657 Query 66453 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 || || || || || | || ||||| || || ||||| |||| || | || Sbjct 796656 GGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCAGG 796597 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCAT 66571 ||||| ||||| | || || ||||| || | || || || | |||||||| Sbjct 796596 TTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAG-ATACCAACAGACACACGCAT 796538 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 | ||| |||||||| | || || ||||| || || || | | ||||||| || Sbjct 796537 GATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGCTC 796478 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690 |||||| || || ||||| || | |||| || || || || || | ||| | |||| Sbjct 796477 CAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCGGAGT 796419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159381502040