Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq486 118 1e-21
seq1496 102 8e-17
>seq486
Length=637844
Score = 118 bits (130), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|||||||| || | || | ||| | ||| | || ||||| || || ||||| || |||
Sbjct 82572 TGGCCGCCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 82631
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|||| |||| ||||| ||||| |||||||| |||| |||||||||||||| ||
Sbjct 82632 CTCAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGG 82691
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713
|| || || || ||||| ||| | || | || | | || | ||||| ||| |||
Sbjct 82692 GGGATACCCTCCTTGTC-CTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTC 82750
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||| ||| | |||||| ||||| | || || ||||| || ||||||
Sbjct 82751 GACCTCAAGGGTGATCGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCATA 82802
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| | ||||| |||||||| || |||||||| ||||| | |||| ||| ||
Sbjct 83330 AACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTC 83389
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
|||||||| || || | |||| ||||||||||||||| || ||||| || ||||| |
Sbjct 83390 AAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTC-CT 83448
Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733
|| | || | || | | || | ||||||| | ||| ||||| | || | ||||
Sbjct 83449 GAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCT 83508
Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||||| || || ||||| || |||||
Sbjct 83509 TGCCGGTCAAGGTCTTGACGAAGATCTGCAT 83539
>seq1496
Length=1355525
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| ||||| || || ||||| || ||||||| |||| || | || |||||||| || ||
Sbjct 510704 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGCC 510646
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
|||| |||| || || ||||| || || || ||||| || ||||| ||| || ||
Sbjct 510645 AGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 510586
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | ||||||| | ||||||||||| ||| | |||||| || || | ||
Sbjct 510585 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 510526
Query 139747 TTTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 510525 CTTGACGAAAATCTGCAT 510508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496053886495200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |