Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq486 118 1e-21 seq1496 102 8e-17 >seq486 Length=637844 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 |||||||| || | || | ||| | ||| | || ||||| || || ||||| || ||| Sbjct 82572 TGGCCGCCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 82631 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| ||||| ||||| |||||||| |||| |||||||||||||| || Sbjct 82632 CTCAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGG 82691 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| | || | || | | || | ||||| ||| ||| Sbjct 82692 GGGATACCCTCCTTGTC-CTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTC 82750 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| | |||||| ||||| | || || ||||| || |||||| Sbjct 82751 GACCTCAAGGGTGATCGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCATA 82802 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| |||||||| || |||||||| ||||| | |||| ||| || Sbjct 83330 AACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTC 83389 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||| || || | |||| ||||||||||||||| || ||||| || ||||| | Sbjct 83390 AAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTC-CT 83448 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||||||| | ||| ||||| | || | |||| Sbjct 83449 GAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCT 83508 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||| || || ||||| || ||||| Sbjct 83509 TGCCGGTCAAGGTCTTGACGAAGATCTGCAT 83539 >seq1496 Length=1355525 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||||||| |||| || | || |||||||| || || Sbjct 510704 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGCC 510646 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 510645 AGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 510586 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||||||||||| ||| | |||||| || || | || Sbjct 510585 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 510526 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 510525 CTTGACGAAAATCTGCAT 510508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053886495200