Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq822 233 3e-56 seq1030 127 3e-24 >seq822 Length=1165972 Score = 233 bits (258), Expect = 3e-56 Identities = 637/961 (66%), Gaps = 22/961 (2%) Strand=Plus/Minus Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 ||| || || || || || || ||||| | || | ||| | || ||||||||||| Sbjct 797368 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCA 797309 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 |||||| || ||||| || | || | ||| || ||||| |||||| ||||| Sbjct 797308 CAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 797249 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || ||||| || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 797248 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 797190 Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGT--GTATA 79853 | || ||||||| || || |||| | ||| | ||| ||||||| | ||| | Sbjct 797189 GCTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTCGTATTTTTCGTAAA 797133 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 | | |||||||| || || | ||| | | ||||| || |||| || ||||| Sbjct 797132 GAGCC--TCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACAT 797075 Query 79914 CAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971 || | ||| || || | || ||| || || |||||||| |||||||| |||||||| Sbjct 797074 CAGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGG 797017 Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 || | || || || | || | |||||| || || |||||| ||||| ||| Sbjct 797016 GCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGG 796957 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 || | | | |||||| ||||| || || | ||| ||||| | | | || ||||| ||| Sbjct 796956 AATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG 796897 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 || || |||||||| | || | ||| ||||| || | || | | ||| |||| || Sbjct 796896 TTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACG 796837 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAA 80209 || ||||||||||| ||||| |||| ||| ||| ||| | ||||||||| | | Sbjct 796836 CCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCACG 796777 Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269 || ||||| || || || ||||| || ||||| | || || || | ||||| | Sbjct 796776 TT--CAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGT 796719 Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329 |||||||||| || || || || |||| | | | || || |||| |||| | Sbjct 796718 AGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCT 796659 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 || || || || || || | || ||||| || || ||||| |||| |||| | Sbjct 796658 GAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCA 796599 Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGC 80448 | ||||| ||||| | || || ||||| || | || || || | |||||| Sbjct 796598 GGTTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAG-ATACCAACAGACACACGC 796540 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || | ||| |||||||| | || || ||||| | || || | | ||| ||| Sbjct 796539 ATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGC 796480 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 |||||||| || || ||||| || | |||| || || || || || | ||| | ||| Sbjct 796479 TCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCGGAG 796420 Query 80569 T 80569 | Sbjct 796419 T 796419 >seq1030 Length=250146 Score = 127 bits (140), Expect = 3e-24 Identities = 357/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| |||||||| || | | || || |||||||| || || || |||||||| || || Sbjct 123904 GTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 123845 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 123844 ACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGC 123785 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCA-CTTTTGAG 50149 || |||||||| || | || || | || | | || || ||||| | || | Sbjct 123784 AGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 123726 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| |||||||||||| | ||||| || || || ||||| || ||||| ||| || Sbjct 123725 CCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 123666 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | || || | || || || || | ||| || | || ||||| |||| Sbjct 123665 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAATGGATGT 123606 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 123605 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 123546 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||||| ||| | | || || || || || || ||| ||| || || || || | | Sbjct 123545 TGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAGGCAAGGA 123486 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || | || | || | || || | | || ||||| || | || ||| | Sbjct 123485 TGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTCGTGGAGATCCT 123426 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 123425 TGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 123366 Query 50507 AGAT 50510 |||| Sbjct 123365 AGAT 123362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254156294840