Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq822 233 3e-56
seq1030 127 3e-24
>seq822
Length=1165972
Score = 233 bits (258), Expect = 3e-56
Identities = 637/961 (66%), Gaps = 22/961 (2%)
Strand=Plus/Minus
Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679
||| || || || || || || ||||| | || | ||| | || |||||||||||
Sbjct 797368 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCA 797309
Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739
|||||| || ||||| || | || | ||| || ||||| |||||| |||||
Sbjct 797308 CAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 797249
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
||| || || ||||| || | ||||| ||| |||||| || | ||| || | ||| |
Sbjct 797248 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 797190
Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGT--GTATA 79853
| || ||||||| || || |||| | ||| | ||| ||||||| | ||| |
Sbjct 797189 GCTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTCGTATTTTTCGTAAA 797133
Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913
| | |||||||| || || | ||| | | ||||| || |||| || |||||
Sbjct 797132 GAGCC--TCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACAT 797075
Query 79914 CAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971
|| | ||| || || | || ||| || || |||||||| |||||||| ||||||||
Sbjct 797074 CAGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGG 797017
Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031
|| | || || || | || | |||||| || || |||||| ||||| |||
Sbjct 797016 GCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGG 796957
Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091
|| | | | |||||| ||||| || || | ||| ||||| | | | || ||||| |||
Sbjct 796956 AATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG 796897
Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151
|| || |||||||| | || | ||| ||||| || | || | | ||| |||| ||
Sbjct 796896 TTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACG 796837
Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAA 80209
|| ||||||||||| ||||| |||| ||| ||| ||| | ||||||||| | |
Sbjct 796836 CCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCACG 796777
Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269
|| ||||| || || || ||||| || ||||| | || || || | ||||| |
Sbjct 796776 TT--CAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGT 796719
Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329
|||||||||| || || || || |||| | | | || || |||| |||| |
Sbjct 796718 AGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCT 796659
Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389
|| || || || || || | || ||||| || || ||||| |||| |||| |
Sbjct 796658 GAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCA 796599
Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGC 80448
| ||||| ||||| | || || ||||| || | || || || | ||||||
Sbjct 796598 GGTTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAG-ATACCAACAGACACACGC 796540
Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508
|| | ||| |||||||| | || || ||||| | || || | | ||| |||
Sbjct 796539 ATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGC 796480
Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568
|||||||| || || ||||| || | |||| || || || || || | ||| | |||
Sbjct 796479 TCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCGGAG 796420
Query 80569 T 80569
|
Sbjct 796419 T 796419
>seq1030
Length=250146
Score = 127 bits (140), Expect = 3e-24
Identities = 357/544 (66%), Gaps = 8/544 (1%)
Strand=Plus/Minus
Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033
||| |||||||| || | | || || |||||||| || || || |||||||| || ||
Sbjct 123904 GTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 123845
Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093
|||||| || ||||| || || || ||||| | || |||||||| || || || ||
Sbjct 123844 ACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGC 123785
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCA-CTTTTGAG 50149
|| |||||||| || | || || | || | | || || ||||| | || |
Sbjct 123784 AGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 123726
Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209
|||| |||||||||||| | ||||| || || || ||||| || ||||| ||| ||
Sbjct 123725 CCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 123666
Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269
| || || | || || || || | ||| || | || ||||| ||||
Sbjct 123665 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAATGGATGT 123606
Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329
| || || ||||| || |||||||| || | |||||||| ||||| || || ||
Sbjct 123605 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 123546
Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389
||||| ||| | | || || || || || || ||| ||| || || || || | |
Sbjct 123545 TGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAGGCAAGGA 123486
Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446
|| | || | || | || || | | || ||||| || | || ||| |
Sbjct 123485 TGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTCGTGGAGATCCT 123426
Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506
| || | ||| | || || | ||||| || || ||||| ||||| || ||||| | ||
Sbjct 123425 TGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 123366
Query 50507 AGAT 50510
||||
Sbjct 123365 AGAT 123362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718254156294840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |