Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq822 250 3e-61 seq1030 125 1e-23 >seq822 Length=1165972 Score = 250 bits (276), Expect = 3e-61 Identities = 637/954 (67%), Gaps = 24/954 (3%) Strand=Plus/Minus Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || || || || || || ||||| | || | ||| | |||||||||||||| Sbjct 797368 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCA 797309 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || ||| || |||||| || | || | ||| || ||||| |||||| ||||| Sbjct 797308 CAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 797249 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 ||| || || || || || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 797248 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAG 797189 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTCGTATTGT--GTATA 71936 | || |||||| | ||| ||||| | ||| || | ||||||| | ||| | Sbjct 797188 CTTCT-GAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTATTTTTCGTAAA 797133 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACATTCATTCGGACACA 71995 | | |||||||| || || |||| | | | | ||||| || || || || |||| Sbjct 797132 GAGCC--TCGAACTCCTC-ACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACA 797076 Query 71996 TCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||| || ||| || || | || ||| || || |||||||| |||||||| |||||||| Sbjct 797075 TCAGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAG 797018 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 || | || || || | || | |||||| || || |||||| ||||| || Sbjct 797017 GGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAG 796958 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 ||| | | | |||||| ||||| || || | ||| ||||| | | | || || || || Sbjct 796957 GAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT 796898 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 ||| || |||||||| | || | ||| ||||| || | || | | ||| |||| || Sbjct 796897 GTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAAC 796838 Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGCTA 72291 || ||||||| ||| ||||| |||| ||| ||| ||| | ||||||||| ||| Sbjct 796837 GCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCAC 796778 Query 72292 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 72351 || ||||| || || || ||||| || ||||| | || || || | ||||| Sbjct 796777 GTT--CAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCG 796720 Query 72352 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 72411 ||||||||||| ||||| || ||| |||| | | | || || |||| |||| | Sbjct 796719 TAGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGC 796660 Query 72412 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 72471 || || || || || || | || ||||| || || ||||| |||| |||| Sbjct 796659 TGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATC 796600 Query 72472 AGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACG 72530 || ||||| ||||| | || || ||||| || | || || || | ||||| Sbjct 796599 AGGTTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAG-ATACCAACAGACACACG 796541 Query 72531 CATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTT 72590 ||| | |||||||||||| | || || ||||| | || || | | ||||||| Sbjct 796540 CATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCG 796481 Query 72591 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||| || || ||||| || | |||| || || || || || | ||| Sbjct 796480 CTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAAT 796427 >seq1030 Length=250146 Score = 125 bits (138), Expect = 1e-23 Identities = 552/863 (64%), Gaps = 22/863 (3%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || | ||||| || ||||| || || ||||| || | | || || || Sbjct 124209 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 124150 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 41892 |||||||| ||||| || ||| || | || || | || | | |||| || | Sbjct 124149 TCCATGAAGTCAAAGGGGTTGCTAGCCTTGTAGACCTTCTCGT-TGCCAAGAGCGACGAG 124091 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 | | ||| |||| ||| || ||||| ||||| | ||| ||||||| || | ||| Sbjct 124090 GAGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAGAAG 124031 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | || |||||| |||| || || || || ||||| | ||| || || || || || Sbjct 124030 GGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGAT 123971 Query 42013 AGATCTTACTGTTTCTTCA-CTCGGTGGAT--ACAATAAATGTTTAAAC--ATCAAACAT 42067 | ||| || || || | ||| || | || || | | | || Sbjct 123970 G-----TCCTGGATCATCTGCTTGCTGGCACGACCCTTAAGGTGAGAGTGGAGGAGGCAG 123916 Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || || || ||| ||||||||||| | | || | |||||||| || || || ||| Sbjct 123915 GCAAAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCG 123856 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| || |||||||| || ||||| || ||||| ||||| | || |||||||| Sbjct 123855 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATA 123796 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATC 42244 || || || || || ||||||| || | || || | || | | || || ||| Sbjct 123795 CCCTCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATC 123736 Query 42245 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 || | || ||||| |||||||||||| | ||||| || || || ||||| || || Sbjct 123735 CATCGGATG-GCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAA 123677 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 ||| ||| || | || || | || || || || | ||| || | || Sbjct 123676 GAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTC 123617 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||||| ||||| || || ||||| || |||||||| || | ||||||| | ||| Sbjct 123616 GGAATGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTG 123557 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || || ||||| ||| | | || ||||| || || || ||| ||| || || Sbjct 123556 GACCTCGCCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAA 123497 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATC 42540 || || | | || | || | | || || | || | || ||||| || Sbjct 123496 GAAGGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTC 123437 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | || ||| || || | ||| | || || | ||||| || || || || ||||| || Sbjct 123436 GTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTT 123377 Query 42601 ATACATATTCCAGA--TATCATG 42621 ||||| | ||||| ||||||| Sbjct 123376 GTACATTTGCCAGATCTATCATG 123354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125517149560