Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq822 250 3e-61
seq1030 125 1e-23
>seq822
Length=1165972
Score = 250 bits (276), Expect = 3e-61
Identities = 637/954 (67%), Gaps = 24/954 (3%)
Strand=Plus/Minus
Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762
||| || || || || || || ||||| | || | ||| | ||||||||||||||
Sbjct 797368 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCA 797309
Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822
|| ||| || |||||| || | || | ||| || ||||| |||||| |||||
Sbjct 797308 CAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 797249
Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881
||| || || || || || | ||||| ||| |||||| || | ||| || | ||| |
Sbjct 797248 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAG 797189
Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTCGTATTGT--GTATA 71936
| || |||||| | ||| ||||| | ||| || | ||||||| | ||| |
Sbjct 797188 CTTCT-GAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTATTTTTCGTAAA 797133
Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACATTCATTCGGACACA 71995
| | |||||||| || || |||| | | | | ||||| || || || || ||||
Sbjct 797132 GAGCC--TCGAACTCCTC-ACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACA 797076
Query 71996 TCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053
||| || ||| || || | || ||| || || |||||||| |||||||| ||||||||
Sbjct 797075 TCAGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAG 797018
Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113
|| | || || || | || | |||||| || || |||||| ||||| ||
Sbjct 797017 GGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAG 796958
Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173
||| | | | |||||| ||||| || || | ||| ||||| | | | || || || ||
Sbjct 796957 GAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT 796898
Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233
||| || |||||||| | || | ||| ||||| || | || | | ||| |||| ||
Sbjct 796897 GTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAAC 796838
Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGCTA 72291
|| ||||||| ||| ||||| |||| ||| ||| ||| | ||||||||| |||
Sbjct 796837 GCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCAC 796778
Query 72292 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 72351
|| ||||| || || || ||||| || ||||| | || || || | |||||
Sbjct 796777 GTT--CAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCG 796720
Query 72352 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 72411
||||||||||| ||||| || ||| |||| | | | || || |||| |||| |
Sbjct 796719 TAGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGC 796660
Query 72412 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 72471
|| || || || || || | || ||||| || || ||||| |||| ||||
Sbjct 796659 TGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATC 796600
Query 72472 AGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACG 72530
|| ||||| ||||| | || || ||||| || | || || || | |||||
Sbjct 796599 AGGTTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAG-ATACCAACAGACACACG 796541
Query 72531 CATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTT 72590
||| | |||||||||||| | || || ||||| | || || | | |||||||
Sbjct 796540 CATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCG 796481
Query 72591 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
|||||||| || || ||||| || | |||| || || || || || | |||
Sbjct 796480 CTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAAT 796427
>seq1030
Length=250146
Score = 125 bits (138), Expect = 1e-23
Identities = 552/863 (64%), Gaps = 22/863 (3%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|| ||||| || | ||||| || ||||| || || ||||| || | | || || ||
Sbjct 124209 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 124150
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 41892
|||||||| ||||| || ||| || | || || | || | | |||| || |
Sbjct 124149 TCCATGAAGTCAAAGGGGTTGCTAGCCTTGTAGACCTTCTCGT-TGCCAAGAGCGACGAG 124091
Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952
| | ||| |||| ||| || ||||| ||||| | ||| ||||||| || | |||
Sbjct 124090 GAGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAGAAG 124031
Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012
| || |||||| |||| || || || || ||||| | ||| || || || || ||
Sbjct 124030 GGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGAT 123971
Query 42013 AGATCTTACTGTTTCTTCA-CTCGGTGGAT--ACAATAAATGTTTAAAC--ATCAAACAT 42067
| ||| || || || | ||| || | || || | | | ||
Sbjct 123970 G-----TCCTGGATCATCTGCTTGCTGGCACGACCCTTAAGGTGAGAGTGGAGGAGGCAG 123916
Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127
|| || || ||| ||||||||||| | | || | |||||||| || || || |||
Sbjct 123915 GCAAAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCG 123856
Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187
||||| || |||||||| || ||||| || ||||| ||||| | || ||||||||
Sbjct 123855 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATA 123796
Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATC 42244
|| || || || || ||||||| || | || || | || | | || || |||
Sbjct 123795 CCCTCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATC 123736
Query 42245 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303
|| | || ||||| |||||||||||| | ||||| || || || ||||| || ||
Sbjct 123735 CATCGGATG-GCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAA 123677
Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363
||| ||| || | || || | || || || || | ||| || | ||
Sbjct 123676 GAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTC 123617
Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423
||||| ||||| || || ||||| || |||||||| || | ||||||| | |||
Sbjct 123616 GGAATGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTG 123557
Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483
|| || || ||||| ||| | | || ||||| || || || ||| ||| || ||
Sbjct 123556 GACCTCGCCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAA 123497
Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATC 42540
|| || | | || | || | | || || | || | || ||||| ||
Sbjct 123496 GAAGGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTC 123437
Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600
| || ||| || || | ||| | || || | ||||| || || || || ||||| ||
Sbjct 123436 GTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTT 123377
Query 42601 ATACATATTCCAGA--TATCATG 42621
||||| | ||||| |||||||
Sbjct 123376 GTACATTTGCCAGATCTATCATG 123354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671125517149560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |