Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1030 248 1e-60 seq822 145 1e-29 seq809 84.2 3e-11 >seq1030 Length=250146 Score = 248 bits (274), Expect = 1e-60 Identities = 573/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| ||||| ||||| | ||| ||| | ||||| Sbjct 123362 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 123421 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | ||| |||||| ||||| || | || Sbjct 123422 TCCAAGGATCTCCACGACTGGAACAATCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 123481 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | |||||||| || | ||| ||||| || |||||||| || || ||||| || Sbjct 123482 CACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAG-CG 123540 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGA 125256 |||| | ||| | || || |||| |||| |||| ||||| ||||| ||||||| Sbjct 123541 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCAGATCATGA 123599 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | || || || | ||||| || ||||||| ||||| || || | Sbjct 123600 TGGAGAACATCCATTCCGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGAGCCCG 123659 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | ||| | ||||| ||||| || || || | || | || || || ||||| Sbjct 123660 CCCAGCGAACCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGAAGGCC 123718 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || || |||||| | || | | || || | ||| | | || || || Sbjct 123719 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCC 123778 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| || || ||||| |||||||| ||| ||||| | ||||| ||||||||| Sbjct 123779 TTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCAAG 123838 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || ||||||||||| ||||| | |||||| | || ||||| || ||||| Sbjct 123839 AAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 123898 Query 125556 CTACACTGTGACTTTGCCATTCTACT-GTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614 || ||| |||||||||| || || || || || | | ||| |||| | | Sbjct 123899 CTCCACACTGACTTTGCCTGCCTCCTCCACTCTCACCT-TAAGGGTC----GTGC-CAGC 123952 Query 125615 CAGC-GATGA-AAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 ||| ||||| ||| ||||| | || |||||||| | || || || ||||| Sbjct 123953 AAGCAGATGATCCAGGACATCA------TCACTGATGCCGTCACCATTGAGCAGGAGTTC 124006 Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 || || || | || || | | | |||||||| | | || ||| |||| Sbjct 124007 CTCACTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGAATTCTGACCTCATGAAGCAGTAT 124066 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAAC 125789 || ||||| || || |||||||| || || ||||| || ||| | ||||| Sbjct 124067 ATTGAGTTCGTCGCCGATCGTCTCCT---CGTCGCTCTTGGCAACGAGAAGGTCTACAAG 124123 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 || | || |||||||| |||||| | ||| || || | || ||||||||||| ||| Sbjct 124124 GCTAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTC 124183 Query 125850 GAGAAG 125855 |||||| Sbjct 124184 GAGAAG 124189 >seq822 Length=1165972 Score = 145 bits (160), Expect = 1e-29 Identities = 307/449 (68%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 796886 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 796945 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | ||| Sbjct 796946 GTCTTCGAATTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGAC 797005 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 |||| || || ||| | || ||| | || |||||||| || || |||||| Sbjct 797006 CTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACGGTG-- 797063 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || || |||| |||| || || ||| Sbjct 797064 -ACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGTGAGGAG 797122 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 || ||||| ||| |||||| | |||||| | || |||| | || | || Sbjct 797123 TTCGAGGCTCTTTACGAAAAATACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGC 797181 Query 97172 ACGAGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| || ||| | ||||| | ||| ||||||| |||||||||| || | ||| Sbjct 797182 TC-AGAAGCTTTGGTATGCCATTCTTGA-GGCTCAGACTGAGACTGGAAACCCTTTCATG 797239 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | ||||||||| | Sbjct 797240 CTCTACAAGGATGCCTGTAACCGCAAGAGCAACCAAAAGAACCTCGGCACCATCCGAAGT 797299 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTA 97318 || || |||||||| |||||| | ||||| Sbjct 797300 TCTAACCTGTGCACTGAAATTATTGAGTA 797328 >seq809 Length=850129 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| | ||||||||| | | ||||||||||||| || ||||||| | || ||||| Sbjct 43300 TTTCCTGTAAAAGATCATGGCACCTCGAGGACCTCTTAGGCTCTTGTGGCTAGTTGTGGT 43359 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA-A 127219 ||||| || || | ||||| ||||||||||| || | |||| |||| ||| | | Sbjct 43360 TACAATATCGGCGTAGGCGAAGGGACCAGGAATGACCTTTGCTGCAA-CAAGACCGGAGA 43418 Query 127220 TGTGTGCAATATCGGCCA 127237 | || ||||||||||||| Sbjct 43419 TATGGGCAATATCGGCCA 43436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044091655560