Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq486 141 2e-28
>seq486
Length=637844
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | |||||||| |||||||| || ||||| | || |||| |||||
Sbjct 83046 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCGTCC 83105
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| || |||||||| || || | ||| ||||||||||| || || || || |||
Sbjct 83106 TCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCC 83165
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||||| || ||||| || | ||||||| | || ||||| || || |||||
Sbjct 83166 TGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGAGTGATAGTT 83225
Query 104528 TTACCAGTAAGTGTTTTTACAAATAT 104553
|| ||||| ||||| || || | |||
Sbjct 83226 TTGCCAGTGAGTGTCTTGACGACTAT 83251
Score = 98.7 bits (108), Expect = 2e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || |||||||| || || ||||| || || | ||||| || || ||||| ||
Sbjct 83343 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCG 83402
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| | | || ||||| || || || || || || ||||||||||| | ||
Sbjct 83403 GCGAAAATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 83462
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || ||| || || ||||| || || || ||||| || || | ||
Sbjct 83463 ACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTC 83522
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 83523 TTGACGAAGATCTGCAT 83539
Score = 93.3 bits (102), Expect = 1e-13
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || | ||| ||||| || || || |||
Sbjct 82605 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTACCA 82664
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481
|| || || || | || |||||||| || || || || || ||||||||| ||||| ||
Sbjct 82665 GCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATC-TTGCTCTT 82723
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | || || || | || ||||| || || || ||||| || || || ||
Sbjct 82724 CACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTTCCGGTGAGAGT 82783
Query 104542 TTTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 82784 CTTGACGAAAATCTGCAT 82801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151374339011748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |