Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq822 98.7 1e-15 seq486 89.7 5e-13 seq1496 84.2 2e-11 >seq822 Length=1165972 Score = 98.7 bits (108), Expect = 1e-15 Identities = 335/511 (66%), Gaps = 21/511 (4%) Strand=Plus/Minus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 |||||| || |||||| ||||||||||| ||||||| || | || ||||| ||| Sbjct 797161 CTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCACCGTAGCAGTCGGC 797102 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCT 148354 | || || ||||||| ||||||||||| || ||| | | || ||||| || | Sbjct 797101 GAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGT---CACCGTTCTTTTCAACACG 797045 Query 148355 CTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC 148414 ||||||||| |||||||| |||| | ||| | | || || || || | ||||| Sbjct 797044 CTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTC 796985 Query 148415 GGCACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTC 148471 ||| | | |||| ||||| | || || || || | |||||||||||| Sbjct 796984 CTTACC---GTGGTTCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTC 796928 Query 148472 GATGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCA- 148527 || ||| | || | || || | | | || || || |||||||||| ||| |||| Sbjct 796927 GAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGATCGACATAGCG-AGCAG 796869 Query 148528 TGCTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCA-GTTCCGTTTGTGGATTCA 148586 || | || || ||||| | ||| ||| ||| | | || ||||| || | Sbjct 796868 TGTTGTTGAAGACACGAAGCATAGG-AACAACGCCGTTGGATGTACCGTTGGTACCGGCG 796810 Query 148587 ATTTTACTATTGGTGGCGCGAATTTGAGTG-ACATTCAGGCCGATGCCGCCTCCGTGTTT 148645 || | || || ||||| | ||| || ||||| || || || || | || Sbjct 796809 ATGTAGGAGCCAGTAGCACGAATACG-GTGCACGTTCAGACCAATACCTCCAGCCATCTT 796751 Query 148646 AGATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAAT 148705 || ||||||||||| ||||| || | |||||||| | ||||||||| || | || Sbjct 796750 GGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCAT 796691 Query 148706 GTTAAGCAGGTAGCACGATGACATTTGAGGC 148736 | | || | |||| ||||||| ||| ||| Sbjct 796690 ATCGACCAAGAAGCAAGATGACAATTGGGGC 796660 >seq486 Length=637844 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | || || | ||| | || ||| | Sbjct 83029 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 82970 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || || |||||| ||||| || || || |||||||||||| Sbjct 82969 GATACCATTGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATCAA 82910 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||| | || ||||| ||||| || || | ||| | |||||| ||| Sbjct 82909 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAAC 82850 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || |||||||| |||| |||| || Sbjct 82849 ATCCAGAAGGAATCTACCCTCCACTTGGTTCT 82818 >seq1496 Length=1355525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || || || | || || || |||||||| | || | || || Sbjct 510504 CAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 510563 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||||||||| | ||||| ||||| ||||| || || || || || || Sbjct 510564 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 510623 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || ||||||| | | ||||| || ||||| |||| | | | | |||||||| Sbjct 510624 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 510683 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || |||| |||||||| Sbjct 510684 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 510719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478652641270320