Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq822 98.7 1e-15
seq486 89.7 5e-13
seq1496 84.2 2e-11
>seq822
Length=1165972
Score = 98.7 bits (108), Expect = 1e-15
Identities = 335/511 (66%), Gaps = 21/511 (4%)
Strand=Plus/Minus
Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297
|||||| || |||||| ||||||||||| ||||||| || | || ||||| |||
Sbjct 797161 CTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCACCGTAGCAGTCGGC 797102
Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCT 148354
| || || ||||||| ||||||||||| || ||| | | || ||||| || |
Sbjct 797101 GAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGT---CACCGTTCTTTTCAACACG 797045
Query 148355 CTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC 148414
||||||||| |||||||| |||| | ||| | | || || || || | |||||
Sbjct 797044 CTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTC 796985
Query 148415 GGCACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTC 148471
||| | | |||| ||||| | || || || || | ||||||||||||
Sbjct 796984 CTTACC---GTGGTTCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTC 796928
Query 148472 GATGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCA- 148527
|| ||| | || | || || | | | || || || |||||||||| ||| ||||
Sbjct 796927 GAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGATCGACATAGCG-AGCAG 796869
Query 148528 TGCTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCA-GTTCCGTTTGTGGATTCA 148586
|| | || || ||||| | ||| ||| ||| | | || ||||| || |
Sbjct 796868 TGTTGTTGAAGACACGAAGCATAGG-AACAACGCCGTTGGATGTACCGTTGGTACCGGCG 796810
Query 148587 ATTTTACTATTGGTGGCGCGAATTTGAGTG-ACATTCAGGCCGATGCCGCCTCCGTGTTT 148645
|| | || || ||||| | ||| || ||||| || || || || | ||
Sbjct 796809 ATGTAGGAGCCAGTAGCACGAATACG-GTGCACGTTCAGACCAATACCTCCAGCCATCTT 796751
Query 148646 AGATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAAT 148705
|| ||||||||||| ||||| || | |||||||| | ||||||||| || | ||
Sbjct 796750 GGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCAT 796691
Query 148706 GTTAAGCAGGTAGCACGATGACATTTGAGGC 148736
| | || | |||| ||||||| ||| |||
Sbjct 796690 ATCGACCAAGAAGCAAGATGACAATTGGGGC 796660
>seq486
Length=637844
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || | |||||||| | || || | ||| | || ||| |
Sbjct 83029 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 82970
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| ||||| || | || || |||||| ||||| || || || ||||||||||||
Sbjct 82969 GATACCATTGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATCAA 82910
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||||||| | || ||||| ||||| || || | ||| | |||||| |||
Sbjct 82909 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAAC 82850
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || || |||||||| |||| |||| ||
Sbjct 82849 ATCCAGAAGGAATCTACCCTCCACTTGGTTCT 82818
>seq1496
Length=1355525
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824
||| ||||| | || || || || | || || || |||||||| | || | || ||
Sbjct 510504 CAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 510563
Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
|||||||||||| | ||||| ||||| ||||| || || || || || ||
Sbjct 510564 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 510623
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
|| || ||||||| | | ||||| || ||||| |||| | | | | ||||||||
Sbjct 510624 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 510683
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || || |||| ||||||||
Sbjct 510684 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 510719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478652641270320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |