Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq486 98.7 9e-16
seq1259 86.0 5e-12
>seq486
Length=637844
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || | |||||||| | ||||| | ||||||||| | |
Sbjct 83029 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 82970
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||| || | || || |||||| ||||| || || || ||||||||||||
Sbjct 82969 GATACCATTGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATCAA 82910
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| |||| || | || ||||||||||| || || | | ||| | ||| || |||
Sbjct 82909 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAAC 82850
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || ||||||||
Sbjct 82849 ATCCAGAAGGAATCTAC 82833
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 24003 GTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAG 24062
|| || ||| | ||||| ||| | || || |||| || ||| | ||| ||||||||
Sbjct 83245 GTCAAGACACTCACTGGCAAAACTATCACTCTCGAGGTTGAGTCATCCGATACCATCGAC 83186
Query 24063 CAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATT 24122
| ||||| |||||| ||||| || || || ||||| ||||| ||| | |||||
Sbjct 83185 AATGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGCCTGATC 83126
Query 24123 TACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAA 24182
| | ||||||||||| || || | | ||| | || ||| || |||||||| || |||
Sbjct 83125 TTTGCTGGCAAGCAACTTGAGGACGGCCGAACCCTCGCCGACTACAACATTCAGAAGGAA 83066
Query 24183 TCTACAATTCAT 24194
||||| |||||
Sbjct 83065 TCTACCCTTCAT 83054
>seq1259
Length=620669
Score = 86.0 bits (94), Expect = 5e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| |||| |||||| || ||||||||||| | ||||| ||||| |||
Sbjct 152515 ATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGAC 152456
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| || ||||| || || || |||||| ||||||| | || || ||||| |||||||||
Sbjct 152455 AAGGAGGGCATTCCCCCGGACCAACAGCGACTGATCTTCGCTGGTAAGCAGCTCGAAGAT 152396
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAA 24178
| | ||| || ||| || ||||| || ||
Sbjct 152395 GGCCGAACTCTCTCCGACTACAACATCCAGAA 152364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429927453812805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |