Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq486 91.5 1e-13
seq1496 87.8 1e-12
>seq486
Length=637844
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || |||||||||||| || ||| | || |||| ||
Sbjct 82599 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGC 82658
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851
|| || || | ||||| || || || || || | ||||| ||||| ||| |||
Sbjct 82659 TTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTG 82718
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
|| |||||| | | | | |||||| | || ||| || | |||||| || ||||||||
Sbjct 82719 CT-CTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTTCCGGT 82777
Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935
|| || ||||| |||||||||||
Sbjct 82778 GAGAGTCTTGACGAAAATCTGCAT 82801
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || || ||||| || ||||||||||||| | ||| | |||||
Sbjct 82818 AGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCC 82877
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | ||| ||||| || | || || |||||||| || ||| | ||||| |||||
Sbjct 82878 TCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCT 82937
Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
||| ||||| |||||| | | | || ||| | ||| ||||| || |||||
Sbjct 82938 TGAATCTTGCT-CTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGT 82996
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| || || || ||||| || || |||||
Sbjct 82997 CTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 83029
>seq1496
Length=1355525
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || |||||||||||| || ||| | |||
Sbjct 510719 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 510660
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| ||| | || || ||||| ||||| || | |||||| |||||
Sbjct 510659 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 510600
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | ||| || | | | | |||||| | |||| || | |||||| ||
Sbjct 510599 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 510540
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || || || || ||||| ||||||||||| |||
Sbjct 510539 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 510504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405079947736690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |