Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1030 123 5e-23
seq588 109 1e-18
seq523 100 6e-16
seq680 89.7 1e-12
>seq1030
Length=250146
Score = 123 bits (136), Expect = 5e-23
Identities = 380/583 (65%), Gaps = 11/583 (2%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| |||||||||||| |||||||| |
Sbjct 124185 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGCTA 124126
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| ||| | |||||| || |||| || || || || || ||||| | |
Sbjct 124125 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACGAGGAGACGATCGGCGACGAACTCAATA 124066
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || ||||| |||||||| | | ||| || | |||||| || |
Sbjct 124065 TACTGCTTCATGAGGTCAGAATTCATGCCGAGAAGGGCACAGGGGAGAGCCTCAGTGAGG 124006
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798
|| |||| || ||| || || || | || ||| ||| ||| | | | |
Sbjct 124005 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATCATCTGCTTGCTGGCA 123946
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| | || || | |||| ||||| | |||| | ||| |||||||| ||
Sbjct 123945 CGAC----CCTTAAGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGGAGACCCTCATC 123890
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| ||||| ||||||||| | |||||| ||||| | ||||| ||| |||||||
Sbjct 123889 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCA 123830
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | | ||||| || ||| | | |||||| ||| | | ||||| ||
Sbjct 123829 GAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCAACGAG 123770
Query 251979 GCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTTCTT 252035
|||| ||||| || ||||| | || | || | ||||| | ||||||||
Sbjct 123769 ACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTT 123710
Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095
|| | || || || || || || | ||||| || | |||| ||| ||||
Sbjct 123709 TCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTCCTT 123650
Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138
|||| | |||| || || ||||| |||| |||||||||
Sbjct 123649 GATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAATGGATG 123607
>seq588
Length=1325811
Score = 109 bits (120), Expect = 1e-18
Identities = 177/252 (70%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375
||| ||| || ||| |||| ||| ||||||||||| || ||||| ||||| |
Sbjct 272625 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACCTTCTCTC 272566
Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435
| || || |||| |||||||| || ||| |||| ||| |||||||||| | |
Sbjct 272565 TTGCCTACGGTGCCAAGATTCTTCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGC 272506
Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495
| || ||||| |||||||| || | || ||| ||| || ||||||||||| |
Sbjct 272505 GTTACGGTCTTTGTGGTCCCAACGGTTCCGGAAAGTCCACCCTCATGCGCGCCATCAACA 272446
Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554
||| ||| | || || || ||||| ||| |||||| | ||| || | || ||||||
Sbjct 272445 ACGAGCAGGTTGAGGGCTTCCCTAA-GCAGAGTGAGGTCAAGACTGTCTTCGTCGAGCAC 272387
Query 279555 GACATCGACTCC 279566
||| ||||||||
Sbjct 272386 GACCTCGACTCC 272375
Score = 96.9 bits (106), Expect = 7e-15
Identities = 96/122 (79%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| || ||||| ||||| |||||| ||||| |||| ||| ||
Sbjct 271194 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTCGCCGCTT 271135
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | ||||| | ||||| || |||||||||||||||||||| |||||
Sbjct 271134 GCTCT-TGGCAGCGACCTCATCTTATCGTCCTTGACGAGCCTACCAACTATCTCGACCGT 271076
Query 280821 GA 280822
||
Sbjct 271075 GA 271074
Score = 95.1 bits (104), Expect = 2e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220
|| || |||| ||||| || || || ||||| || ||||||||||| ||||| || ||
Sbjct 271780 TCCCGTATTGCCGTCATCGGTCCTAACGGTGCTGGCAAGTCTACCCTGATCAACGTTCTC 271721
Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280
||||| ||| | |||| |||| | | |||| ||||| || || ||
Sbjct 271720 ACTGGTGAGCTCATCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGCC 271661
Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340
||| | ||||| |||||| |||||||| ||||| || |||| ||||||| | |
Sbjct 271660 TACATTAAGCAGCATGCTTTCGCTCACATCGATAACCATCTCGACAAGACTCCTTCCGAG 271601
Query 280341 TACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||||| |||||||| | | || | ||| |||||| ||| | |||||||
Sbjct 271600 TACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGATCG 271551
>seq523
Length=179213
Score = 100 bits (110), Expect = 6e-16
Identities = 199/295 (67%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 218516 CTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTC 218575
||||||| ||| ||| || || ||||| ||| | |||| ||| || || |
Sbjct 139012 CTGACTTTATCAACAGAGAACTTATTCTCTTCAGTATGGCTGATAACATGCGATCCATCC 138953
Query 218576 CCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGC 218635
| ||| |||||||| ||||||| ||||||||| || | | |||| ||||||
Sbjct 138952 CGTCCGTACTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGA 138893
Query 218636 GGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTG 218695
| ||| |||| |||| | ||||||| | | || |||||||||| |||||| |||
Sbjct 138892 GAAACTTGGTCAAAGACAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCCGAACAGACTG 138833
Query 218696 GCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755
||||||||||||||| ||| ||| ||| | || | ||| | || ||| | | |
Sbjct 138832 CCTACCATCACGGTGAACAGTCTCTCCAGCAGACTATCATTGGCCTAGCCCAGAATTTCG 138773
Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810
| || |||||||| |||| || |||| || | || |||||||| ||
Sbjct 138772 TCGGTTCAAACAACATCAACTGTCTAGAACCCAGTGGAAACTTCGGTTCTCGACT 138718
>seq680
Length=1261114
Score = 89.7 bits (98), Expect = 1e-12
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| ||||| || || || |||||||||||||||||||| || | || || || || |
Sbjct 1150959 AGTTGGTTCCCTTTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 1150900
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
|||||| ||||| || || || || || || || ||||| | || ||||| | ||
Sbjct 1150899 GCGTGCTGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 1150840
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872
||||| | | |||||| | ||||| | || | || || ||||| ||||||
Sbjct 1150839 ATGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATAACTAGTCTGATTGTTTCTCAC 1150782
Query 279873 GACTCTGGCTTCCTAGA 279889
|||||||| || || ||
Sbjct 1150781 GACTCTGGATTTCTGGA 1150765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027815321101671
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