Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1030 123 5e-23 seq588 109 1e-18 seq523 100 6e-16 seq680 89.7 1e-12 >seq1030 Length=250146 Score = 123 bits (136), Expect = 5e-23 Identities = 380/583 (65%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| |||||||||||| |||||||| | Sbjct 124185 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGCTA 124126 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || |||| || || || || || ||||| | | Sbjct 124125 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACGAGGAGACGATCGGCGACGAACTCAATA 124066 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || ||||| |||||||| | | ||| || | |||||| || | Sbjct 124065 TACTGCTTCATGAGGTCAGAATTCATGCCGAGAAGGGCACAGGGGAGAGCCTCAGTGAGG 124006 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || ||| || || || | || ||| ||| ||| | | | | Sbjct 124005 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATCATCTGCTTGCTGGCA 123946 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | || || | |||| ||||| | |||| | ||| |||||||| || Sbjct 123945 CGAC----CCTTAAGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGGAGACCCTCATC 123890 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | |||||| ||||| | ||||| ||| ||||||| Sbjct 123889 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCA 123830 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| || ||| | | |||||| ||| | | ||||| || Sbjct 123829 GAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCAACGAG 123770 Query 251979 GCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTTCTT 252035 |||| ||||| || ||||| | || | || | ||||| | |||||||| Sbjct 123769 ACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTT 123710 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 || | || || || || || || | ||||| || | |||| ||| |||| Sbjct 123709 TCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTCCTT 123650 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||| | |||| || || ||||| |||| ||||||||| Sbjct 123649 GATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAATGGATG 123607 >seq588 Length=1325811 Score = 109 bits (120), Expect = 1e-18 Identities = 177/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| ||||| | Sbjct 272625 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACCTTCTCTC 272566 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| |||||||| || ||| |||| ||| |||||||||| | | Sbjct 272565 TTGCCTACGGTGCCAAGATTCTTCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGC 272506 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| |||||||| || | || ||| ||| || ||||||||||| | Sbjct 272505 GTTACGGTCTTTGTGGTCCCAACGGTTCCGGAAAGTCCACCCTCATGCGCGCCATCAACA 272446 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | || || || ||||| ||| |||||| | ||| || | || |||||| Sbjct 272445 ACGAGCAGGTTGAGGGCTTCCCTAA-GCAGAGTGAGGTCAAGACTGTCTTCGTCGAGCAC 272387 Query 279555 GACATCGACTCC 279566 ||| |||||||| Sbjct 272386 GACCTCGACTCC 272375 Score = 96.9 bits (106), Expect = 7e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| ||||| |||||| ||||| |||| ||| || Sbjct 271194 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTCGCCGCTT 271135 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | ||||| | ||||| || |||||||||||||||||||| ||||| Sbjct 271134 GCTCT-TGGCAGCGACCTCATCTTATCGTCCTTGACGAGCCTACCAACTATCTCGACCGT 271076 Query 280821 GA 280822 || Sbjct 271075 GA 271074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||| || || || ||||| || ||||||||||| ||||| || || Sbjct 271780 TCCCGTATTGCCGTCATCGGTCCTAACGGTGCTGGCAAGTCTACCCTGATCAACGTTCTC 271721 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 ||||| ||| | |||| |||| | | |||| ||||| || || || Sbjct 271720 ACTGGTGAGCTCATCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGCC 271661 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 ||| | ||||| |||||| |||||||| ||||| || |||| ||||||| | | Sbjct 271660 TACATTAAGCAGCATGCTTTCGCTCACATCGATAACCATCTCGACAAGACTCCTTCCGAG 271601 Query 280341 TACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | ||||||| Sbjct 271600 TACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGATCG 271551 >seq523 Length=179213 Score = 100 bits (110), Expect = 6e-16 Identities = 199/295 (67%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 218516 CTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTC 218575 ||||||| ||| ||| || || ||||| ||| | |||| ||| || || | Sbjct 139012 CTGACTTTATCAACAGAGAACTTATTCTCTTCAGTATGGCTGATAACATGCGATCCATCC 138953 Query 218576 CCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGC 218635 | ||| |||||||| ||||||| ||||||||| || | | |||| |||||| Sbjct 138952 CGTCCGTACTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGA 138893 Query 218636 GGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTG 218695 | ||| |||| |||| | ||||||| | | || |||||||||| |||||| ||| Sbjct 138892 GAAACTTGGTCAAAGACAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCCGAACAGACTG 138833 Query 218696 GCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 ||||||||||||||| ||| ||| ||| | || | ||| | || ||| | | | Sbjct 138832 CCTACCATCACGGTGAACAGTCTCTCCAGCAGACTATCATTGGCCTAGCCCAGAATTTCG 138773 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 | || |||||||| |||| || |||| || | || |||||||| || Sbjct 138772 TCGGTTCAAACAACATCAACTGTCTAGAACCCAGTGGAAACTTCGGTTCTCGACT 138718 >seq680 Length=1261114 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 1150959 AGTTGGTTCCCTTTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 1150900 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 |||||| ||||| || || || || || || || ||||| | || ||||| | || Sbjct 1150899 GCGTGCTGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 1150840 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | || | || || ||||| |||||| Sbjct 1150839 ATGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATAACTAGTCTGATTGTTTCTCAC 1150782 Query 279873 GACTCTGGCTTCCTAGA 279889 |||||||| || || || Sbjct 1150781 GACTCTGGATTTCTGGA 1150765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027815321101671