Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1496 170 4e-37
seq486 167 4e-36
seq1259 152 9e-32
seq1030 120 6e-22
seq588 86.0 1e-11
>seq1496
Length=1355525
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || |||||||| || |||||||| || |||
Sbjct 510734 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 510675
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || ||||| || ||
Sbjct 510674 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 510615
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 510614 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 510555
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 510554 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 510508
>seq486
Length=637844
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||||| || || || || || |||||||| || |||||
Sbjct 82803 CCACCACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAA 82862
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| || ||||| ||||||| ||||| ||||| |||
Sbjct 82863 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 82922
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||| ||| || || ||||| || | ||| || |||
Sbjct 82923 ATACCCTCCTTGTCTTGAATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 82982
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| || ||||| ||||| ||||||||||||||||| || |||||
Sbjct 82983 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 83029
Score = 150 bits (166), Expect = 3e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| || || ||||| || || ||||| ||||| |||
Sbjct 83313 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAG 83372
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||| || |||||||| || | | ||| || ||||| ||
Sbjct 83373 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGG 83432
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||||||| ||||| ||||| | || || ||
Sbjct 83433 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACC 83492
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | |||||||| || || || | |||||||||||| |||||||| |||
Sbjct 83493 TCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 83543
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| |||||||| || | || | ||| || || ||||| || |||||||| || |||
Sbjct 82575 CCGCCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 82634
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| || ||||| || || | ||| || || || ||
Sbjct 82635 AGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGG 82694
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| ||| ||| ||||| ||||| || || ||
Sbjct 82695 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACC 82754
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct 82755 TCAAGGGTGATCGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 82801
>seq1259
Length=620669
Score = 152 bits (168), Expect = 9e-32
Identities = 141/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | |||||||| | |||||| || ||||| ||
Sbjct 152364 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGCTTACCAGCGAAGATC 152423
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|||| |||||||| || |||||||| |||||||| || ||||| | |||||| |||
Sbjct 152424 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 152483
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || ||||| |||||||| |||||
Sbjct 152484 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 152542
>seq1030
Length=250146
Score = 120 bits (132), Expect = 6e-22
Identities = 555/867 (64%), Gaps = 33/867 (4%)
Strand=Plus/Minus
Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997
||| || ||||||||||| || | || || |||||||||||||| |||||| | ||
Sbjct 124219 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 124160
Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTT-CTCGGC-GCCAAACTGCTTGGGGTAACCG 10055
||| ||| ||||||||||||||||||||| || | | | || ||| || ||
Sbjct 124159 GGAGATGTTCTCCATGAAGTCAAAGGGGTTGCTAGCCTTGTAGAC--CTTCTCGTTGCCA 124102
Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115
|| || || | || || || |||||||| || ||||| |||| ||||| || |||
Sbjct 124101 AGAGCGACGAGGAGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTC 124042
Query 10116 ATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCT 10175
||||| | | | ||||||| || || | ||| |||| || ||| ||| ||
Sbjct 124041 ATGCCGAGAAGGGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCA 123982
Query 10176 TCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231
|| || |||| || | || | | || || | || || | || |
Sbjct 123981 TCAGTGATGATGTCCTGGATCATCTGCTTGCTGGCACGAC----CCTTAAGGTGAGAGTG 123926
Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291
||||| |||| | |||||| ||||| || || ||||| ||||||||| ||
Sbjct 123925 GAGGAGGCAGGCAAAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAA 123866
Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGA 10351
||| ||||||||||| || || || |||||||| || | | || | |||
Sbjct 123865 GGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCT 123806
Query 10352 GAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC 10410
||| | | |||||| || ||| | |||| ||||| |||| || |||||| ||| |
Sbjct 123805 GAAGAAGATACCCTCAACAGCA-GCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTC-C 123748
Query 10411 GCGAAAAGTAT--TTCG--AGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCG 10466
| || ||| |||||| | |||||||||| | | ||| || |||||
Sbjct 123747 TTATCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCA 123688
Query 10467 ATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGG 10526
|| || | |||||| | | | |||| || |||| || | |||| ||| |||
Sbjct 123687 ATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGG 123628
Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCC 10586
||||| |||| |||| | |||| | |||| | ||||||| ||| |||
Sbjct 123627 GAGTAGGTCTCGGAATGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCC 123568
Query 10587 GAGGGGTCCGTGACTTCCTCGGCA--AAGTTGTTGTTC-AGGTTCTCCATCACCATGCCA 10643
|||| | || ||||| || | | | | | |||||||| | || || |||
Sbjct 123567 TCGGGGATCTGGA---CCTCGCCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCA 123511
Query 10644 TCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG- 10702
|| | | || |||||| | |||||||| || |||| ||||||| | ||||
Sbjct 123510 TCAGAGGCAGCGAAGAAGGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGG 123451
Query 10703 ---TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759
|| || |||||| | ||||| | ||| | | |||||| | ||||||||
Sbjct 123450 CGATTGTT----CCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAA 123395
Query 10760 AGTGGCAACGGCCTTCTTGTACATCTG 10786
| || | |||||||||||||| ||
Sbjct 123394 GGAAGCCTCAGCCTTCTTGTACATTTG 123368
>seq588
Length=1325811
Score = 86.0 bits (94), Expect = 1e-11
Identities = 436/680 (64%), Gaps = 45/680 (7%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | || ||| |||| || ||||| || || || |||||||
Sbjct 271587 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCA 271646
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 271647 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 271706
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| || ||||| || ||||| || |||| |||||| ||||| || || || ||
Sbjct 271707 ATGAG-CTCACCAGTGAGAACGTTGATCAGGGTAGACTTGCCAGCACCGTTAGGACCGAT 271765
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TG---CTGAAGATCTCA 225214
||| |||| ||||| || | ||| || | || || |||| | | |
Sbjct 271766 GACGGCAATACGGGAACCCAGAGAGCACTGGAAGGAAATGTCCTGGATCTGAGGCTTGGA 271825
Query 225215 GG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTC 225267
|| |||| |||| |||| || | |||| || || || | |
Sbjct 271826 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATAGCCTTGGC 271876
Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327
||||| | | |||||| ||||| |||||||| ||||| ||| || | | ||
Sbjct 271877 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGTGAACTCCATCTCGGACTC 271936
Query 225328 CTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384
|| ||||||||||| |||| |||| || || ||||| |||| ||||||
Sbjct 271937 ACCAAGCTCGTAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGGTT 271993
Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443
|| || | ||||||||| |||||| || || || || | ||| ||
Sbjct 271994 ACCCTTGTAGCGCTTGAGCTTGA---AACGCTCGTAGTGGACGATGTGTTG-GCAGACAT 272049
Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502
||| ||||| ||||||||||| || || |||||||| | || | | || |||
Sbjct 272050 TGTCGAGGAAACCAGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GAGAG----TTG 272102
Query 225503 ---AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559
|||| |||||| ||||| | || |||| ||||| ||||| |||||
Sbjct 272103 ATAAGGTATTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCA 272162
Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619
||||||||||| |||| | | || || ||| || |||| |||||||| |||||
Sbjct 272163 AGAAGCAGGATATCAGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAA 272222
Query 225620 CCCCCGGACAGGGAGCCGAT 225639
|| || || |||| || |||
Sbjct 272223 CCACCAGAGAGGGCGCTGAT 272242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921603610423320
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