Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1496 170 4e-37 seq486 167 4e-36 seq1259 152 9e-32 seq1030 120 6e-22 seq588 86.0 1e-11 >seq1496 Length=1355525 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||| Sbjct 510734 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 510675 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || ||||| || || Sbjct 510674 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 510615 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 510614 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 510555 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 510554 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 510508 >seq486 Length=637844 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || || || || |||||||| || ||||| Sbjct 82803 CCACCACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAA 82862 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| || ||||| ||||||| ||||| ||||| ||| Sbjct 82863 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 82922 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| ||| || || ||||| || | ||| || ||| Sbjct 82923 ATACCCTCCTTGTCTTGAATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 82982 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || ||||| ||||| ||||||||||||||||| || ||||| Sbjct 82983 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 83029 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || || ||||| ||||| ||| Sbjct 83313 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAG 83372 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || |||||||| || | | ||| || ||||| || Sbjct 83373 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGG 83432 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| ||||| ||||| | || || || Sbjct 83433 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACC 83492 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | |||||||| || || || | |||||||||||| |||||||| ||| Sbjct 83493 TCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 83543 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || ||||| || |||||||| || ||| Sbjct 82575 CCGCCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 82634 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | ||| || || || || Sbjct 82635 AGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGG 82694 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||| ||| ||||| ||||| || || || Sbjct 82695 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACC 82754 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || ||||| ||||| ||||||||||| |||||||| Sbjct 82755 TCAAGGGTGATCGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 82801 >seq1259 Length=620669 Score = 152 bits (168), Expect = 9e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | |||||||| | |||||| || ||||| || Sbjct 152364 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGCTTACCAGCGAAGATC 152423 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||||| || |||||||| |||||||| || ||||| | |||||| ||| Sbjct 152424 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 152483 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 152484 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 152542 >seq1030 Length=250146 Score = 120 bits (132), Expect = 6e-22 Identities = 555/867 (64%), Gaps = 33/867 (4%) Strand=Plus/Minus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||| || ||||||||||| || | || || |||||||||||||| |||||| | || Sbjct 124219 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 124160 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTT-CTCGGC-GCCAAACTGCTTGGGGTAACCG 10055 ||| ||| ||||||||||||||||||||| || | | | || ||| || || Sbjct 124159 GGAGATGTTCTCCATGAAGTCAAAGGGGTTGCTAGCCTTGTAGAC--CTTCTCGTTGCCA 124102 Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115 || || || | || || || |||||||| || ||||| |||| ||||| || ||| Sbjct 124101 AGAGCGACGAGGAGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTC 124042 Query 10116 ATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCT 10175 ||||| | | | ||||||| || || | ||| |||| || ||| ||| || Sbjct 124041 ATGCCGAGAAGGGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCA 123982 Query 10176 TCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || || |||| || | || | | || || | || || | || | Sbjct 123981 TCAGTGATGATGTCCTGGATCATCTGCTTGCTGGCACGAC----CCTTAAGGTGAGAGTG 123926 Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291 ||||| |||| | |||||| ||||| || || ||||| ||||||||| || Sbjct 123925 GAGGAGGCAGGCAAAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAA 123866 Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGA 10351 ||| ||||||||||| || || || |||||||| || | | || | ||| Sbjct 123865 GGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCT 123806 Query 10352 GAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC 10410 ||| | | |||||| || ||| | |||| ||||| |||| || |||||| ||| | Sbjct 123805 GAAGAAGATACCCTCAACAGCA-GCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTC-C 123748 Query 10411 GCGAAAAGTAT--TTCG--AGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCG 10466 | || ||| |||||| | |||||||||| | | ||| || ||||| Sbjct 123747 TTATCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCA 123688 Query 10467 ATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGG 10526 || || | |||||| | | | |||| || |||| || | |||| ||| ||| Sbjct 123687 ATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGG 123628 Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCC 10586 ||||| |||| |||| | |||| | |||| | ||||||| ||| ||| Sbjct 123627 GAGTAGGTCTCGGAATGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCC 123568 Query 10587 GAGGGGTCCGTGACTTCCTCGGCA--AAGTTGTTGTTC-AGGTTCTCCATCACCATGCCA 10643 |||| | || ||||| || | | | | | |||||||| | || || ||| Sbjct 123567 TCGGGGATCTGGA---CCTCGCCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCA 123511 Query 10644 TCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG- 10702 || | | || |||||| | |||||||| || |||| ||||||| | |||| Sbjct 123510 TCAGAGGCAGCGAAGAAGGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGG 123451 Query 10703 ---TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759 || || |||||| | ||||| | ||| | | |||||| | |||||||| Sbjct 123450 CGATTGTT----CCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAA 123395 Query 10760 AGTGGCAACGGCCTTCTTGTACATCTG 10786 | || | |||||||||||||| || Sbjct 123394 GGAAGCCTCAGCCTTCTTGTACATTTG 123368 >seq588 Length=1325811 Score = 86.0 bits (94), Expect = 1e-11 Identities = 436/680 (64%), Gaps = 45/680 (7%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| || ||||| || || || ||||||| Sbjct 271587 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCA 271646 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 271647 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 271706 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || ||||| || ||||| || |||| |||||| ||||| || || || || Sbjct 271707 ATGAG-CTCACCAGTGAGAACGTTGATCAGGGTAGACTTGCCAGCACCGTTAGGACCGAT 271765 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TG---CTGAAGATCTCA 225214 ||| |||| ||||| || | ||| || | || || |||| | | | Sbjct 271766 GACGGCAATACGGGAACCCAGAGAGCACTGGAAGGAAATGTCCTGGATCTGAGGCTTGGA 271825 Query 225215 GG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTC 225267 || |||| |||| |||| || | |||| || || || | | Sbjct 271826 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATAGCCTTGGC 271876 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | |||||| ||||| |||||||| ||||| ||| || | | || Sbjct 271877 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGTGAACTCCATCTCGGACTC 271936 Query 225328 CTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 || ||||||||||| |||| |||| || || ||||| |||| |||||| Sbjct 271937 ACCAAGCTCGTAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGGTT 271993 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443 || || | ||||||||| |||||| || || || || | ||| || Sbjct 271994 ACCCTTGTAGCGCTTGAGCTTGA---AACGCTCGTAGTGGACGATGTGTTG-GCAGACAT 272049 Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502 ||| ||||| ||||||||||| || || |||||||| | || | | || ||| Sbjct 272050 TGTCGAGGAAACCAGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GAGAG----TTG 272102 Query 225503 ---AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559 |||| |||||| ||||| | || |||| ||||| ||||| ||||| Sbjct 272103 ATAAGGTATTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCA 272162 Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619 ||||||||||| |||| | | || || ||| || |||| |||||||| ||||| Sbjct 272163 AGAAGCAGGATATCAGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAA 272222 Query 225620 CCCCCGGACAGGGAGCCGAT 225639 || || || |||| || ||| Sbjct 272223 CCACCAGAGAGGGCGCTGAT 272242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921603610423320