Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1030 376 5e-99 seq822 358 1e-93 >seq1030 Length=250146 Score = 376 bits (416), Expect = 5e-99 Identities = 606/856 (71%), Gaps = 20/856 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| || Sbjct 123362 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 123421 Query 42360 GCCAAGGACACGGCCGGCTGGGAG--TCAC-TGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | || | || ||| | || |||| ||| || Sbjct 123422 TCCAAGGATCTCCACGACTGGAACAATCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 123481 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || ||||||||||| |||||||| || || ||||| |||||||| | | Sbjct 123482 CACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAGCGA 123541 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| ||| | ||||| || |||||||||||||||||||| || Sbjct 123542 TTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 123601 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||| | || || ||| ||| || || |||| |||| |||||| ||| ||| Sbjct 123602 GAGAACATCCATTCCGAGACCTACTCC---CTTCTCATTGACACCTACATCAAGGAGCCC 123658 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 | | |||| | | || ||||| ||||| ||||| || || |||||| |||||||| Sbjct 123659 GCCCAGCGAACCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGAAGGCC 123718 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCC 42713 |||||||| || |||||| || | ||| | | || | | || | || || ||| Sbjct 123719 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCC 123778 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || | || || ||||| ||||||||| || ||||| ||||| ||||||||||||||| Sbjct 123779 TTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCAAG 123838 Query 42774 CAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 || ||| || |||||||| || |||||||| ||||| |||||| | || ||||| Sbjct 123839 AAGCGTGGTCTC-ATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGG 123897 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC-TCAGGCACAAGCCCTCGA 42891 || || | ||||||||||||||||| ||| |||| | ||| | ||| | | Sbjct 123898 TCTCCACACTGACTTTGCCTGCCTCCTCCACTC---TCACCTTAAGGGTCGTGCCAGC-A 123953 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 || || | ||| || ||||||||| || ||||| || ||| ||||||||||||| Sbjct 123954 AGCAGATGATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTG 124013 Query 42952 AGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | || ||| ||| |||| |||||||||| ||||||||| |||| || || Sbjct 124014 AGGCTCTCCCCTGTG-CCCTTCTCGGCATGAATTCTGACCTCATGAAGCAGTATATTGAG 124072 Query 43011 TACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG 43069 | ||||||||| | |||||| || | ||| || | ||||||| | Sbjct 124073 TTCGTCGCCGATCGTCTCCTCGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCTAGCAA 124131 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| | | |||||||||||||| ||||||||||| Sbjct 124132 CCCCTTTGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCG 124191 Query 43130 CGTCGCCGACTACCAG 43145 || |||||||||||| Sbjct 124192 TGTTGCCGACTACCAG 124207 >seq822 Length=1165972 Score = 358 bits (396), Expect = 1e-93 Identities = 906/1359 (67%), Gaps = 43/1359 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || |||||||||| |||| | || || Sbjct 797941 GTTGACAACCTGGAACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 797882 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 797881 CTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAG 797822 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | ||||| ||| || | | || |||| |||| | Sbjct 797821 GAGCAGACTGTTACGGATACCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 797771 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||| ||||| || | |||| Sbjct 797770 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAG 797712 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | |||| ||||| | |||| | ||||||||| || || |||||||| || | Sbjct 797711 AGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACGGAGG 797652 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||||||||||||||||||| |||||| | || || |||| | Sbjct 797651 CAGT-GAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCG 797593 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| |||| || | ||| | || || || ||||| || |||| Sbjct 797592 GGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGA 797533 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| ||||| | || | || |||| || ||||| ||| | Sbjct 797532 CCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCGGG-ACAGGGTAGTGGTTCAC 797474 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 |||||| | |||||| |||||||| | | || | ||| ||| ||| || | || | Sbjct 797473 GTCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTCGTGCAACTTCTTGA 797415 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | ||| || ||| | || ||| | || | || || | Sbjct 797414 AGTCGTA---GCAGGCCTCATCGTAGTTGATGA-----AGGAAGGC----AGAGCTAGAG 797367 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| ||||||||||| || ||||| || | | |||| | ||| || ||||| | Sbjct 797366 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCACA 797307 Query 244746 GGTTACTGCACTT--GATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 ||||| | |||| ||||||||| |||| || || ||| |||| ||| ||||| || Sbjct 797306 GGTTA--GAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 797249 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || || ||||| ||| || | || | | | ||| || Sbjct 797248 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAG 797189 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||| ||| ||||| |||||||||| |||||| ||| || || Sbjct 797188 CTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGC 797129 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||||||||| || || ||| | ||||| |||||| |||||||| || | Sbjct 797128 CTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGT 797069 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || ||| | | || | || ||| || || || |||||||| ||||| |||| Sbjct 797068 CCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAA 797009 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | || | ||| ||| || |||||| | || || | || || || Sbjct 797008 CAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAATTCGAA 796949 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || |||||| ||||| | ||||| || | || ||||| ||||||||||| || Sbjct 796948 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 796889 Query 245164 CTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||| || | | | ||||| |||||||| || || |||| || | ||||| Sbjct 796888 CTGATCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGT 796833 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTG-ATGGAC 245278 | || |||||||| || |||||||| ||| | | | || | || | | | Sbjct 796832 TGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCAC-GAATACGGTGCACGTTC 796774 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | || | || || || ||||||||| | ||| ||| |||||| || || ||| Sbjct 796773 AGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATG 796714 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 ||||| || ||||| |||||| | || || ||||| || |||| ||||||| ||| Sbjct 796713 CCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGG 796654 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | | | |||||| || ||||| ||| || |||||| Sbjct 796653 GTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAG 796615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319947284560