Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1030 111 3e-19 seq588 104 5e-17 >seq1030 Length=250146 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | |||||||| ||||| |||||| ||||| || || ||||| ||||| || | Sbjct 124031 CTTCTCGGCATGAATTCTGACCTCATGAAGCAGTATATTGAGTTCGTCGCCGATCGTCTC 124090 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| ||||| | ||||| || ||||| | | |||||||||| ||| |||||| Sbjct 124091 CTCGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCTAGCAACCCCTTTGACTTCATGGAG 124150 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| || ||| || || || ||||||||||| |||||||| Sbjct 124151 AACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGT 124194 >seq588 Length=1325811 Score = 104 bits (114), Expect = 5e-17 Identities = 175/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||| || ||| ||| | || ||||| |||||| ||||| || ||| | |||| | Sbjct 272347 AGTCGATAGTAGTCATCTCAGTATCGGCGGAGTCGAGGTCGTGCTCGACGAAGACAGTCT 272406 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | || || || |||| | |||| ||| ||| |||| || |||||||| || Sbjct 272407 TGACCTCACTCTGCTTAGGGAAGCCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGG 272465 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || ||||| |||||||| || | |||||||| ||| | Sbjct 272466 GTGGACTTTCCGGAACCGTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGG 272525 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 272526 AGATGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 272585 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 272586 AGATCCTCACC 272596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102856952909850