Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq1030 111 3e-19
seq588 104 5e-17
>seq1030
Length=250146
Score = 111 bits (122), Expect = 3e-19
Identities = 123/164 (75%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621
||| | |||||||| ||||| |||||| ||||| || || ||||| ||||| || |
Sbjct 124031 CTTCTCGGCATGAATTCTGACCTCATGAAGCAGTATATTGAGTTCGTCGCCGATCGTCTC 124090
Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681
|| |||| ||||| | ||||| || ||||| | | |||||||||| ||| ||||||
Sbjct 124091 CTCGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCTAGCAACCCCTTTGACTTCATGGAG 124150
Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725
||| || ||| || || || ||||||||||| ||||||||
Sbjct 124151 AACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGT 124194
>seq588
Length=1325811
Score = 104 bits (114), Expect = 5e-17
Identities = 175/251 (70%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164
|||| || ||| ||| | || ||||| |||||| ||||| || ||| | |||| |
Sbjct 272347 AGTCGATAGTAGTCATCTCAGTATCGGCGGAGTCGAGGTCGTGCTCGACGAAGACAGTCT 272406
Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223
| | || || || |||| | |||| ||| ||| |||| || |||||||| ||
Sbjct 272407 TGACCTCACTCTGCTTAGGGAAGCCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGG 272465
Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283
|| || || || | ||||| || ||||| |||||||| || | |||||||| ||| |
Sbjct 272466 GTGGACTTTCCGGAACCGTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGG 272525
Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343
| | || | ||| |||||||| || |||| || || ||||| || ||| | ||
Sbjct 272526 AGATGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 272585
Query 334344 AGATCCTCACC 334354
|||||||||||
Sbjct 272586 AGATCCTCACC 272596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102856952909850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |