Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1496 107 2e-18 seq1030 105 7e-18 seq486 95.1 1e-14 >seq1496 Length=1355525 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || || || | | Sbjct 510701 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCA 510642 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 510641 AAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 510582 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 510581 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 510522 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 510521 ACGAAAATCTGCAT 510508 >seq1030 Length=250146 Score = 105 bits (116), Expect = 7e-18 Identities = 299/455 (66%), Gaps = 21/455 (5%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 ||| |||| | || |||||||| || ||||| | || || ||| ||||||| Sbjct 123761 GCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCC 123820 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 | ||||| | | || | | || | |||||||||||||| ||| ||||||| | Sbjct 123821 TCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTC 123880 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACT---ACAAGACG 52565 || || || || || || || ||||| |||||||| |||||| ||| || | | Sbjct 123881 ATCTCTCGTGATGAGGGTCTCCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTTAAG 123940 Query 52566 CG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 | |||| | | || | | | ||||| | ||| ||| || || || | Sbjct 123941 GGTCGTGCCAGCAA----------GCAGATGATCCAGGACATCATCACTGATGCCGTCAC 123990 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 || || ||||||| | || | || || || | || || |||||||| | | Sbjct 123991 CATTGAGCAGGAGTTCCTCACTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGAATTCTGA 124050 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGC 52743 |||| |||| || ||||| || || |||||||| | || |||| |||| | Sbjct 124051 CCTCATGAAGCAGTATATTGAGTTCGTCGCCGATCGTCTCCTCGTC--GCTCTTGGCAAC 124108 Query 52744 CA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 | ||| || ||| ||| |||| || ||||| || ||| | ||||| || |||| ||| Sbjct 124109 GAGAAGGTCTACAAGGCTAGCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGTGGC 124168 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||||| || | ||| || Sbjct 124169 AAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTA 124203 >seq486 Length=637844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||||||| || || || || || || ||||| | Sbjct 82606 TTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTACCAG 82665 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || || || || || ||||| || ||||| ||| | || | || Sbjct 82666 CGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTC-CTGAATCTTGCTCTTC 82724 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||| | ||||| ||||| | || | ||| || || || ||||| Sbjct 82725 ACGTTG-TCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTTCCGGTGAGAGT 82783 Query 138597 TTTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 82784 CTTGACGAAAATCTGCAT 82801 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | || || |||||| ||||| || || | | Sbjct 83064 GATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCAAGTTGCTTGCCAGCA 83123 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || || ||||| ||||| || ||||| ||| ||| || | | Sbjct 83124 AAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACA 83183 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||||| ||||||| || | ||||| ||||| || || || Sbjct 83184 TTG-TCGATGGTATCGGATGACTCAACCTCGAGAGTGATAGTTTTGCCAGTGAGTGTCTT 83242 Query 138600 TAC 138602 || Sbjct 83243 GAC 83245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | || ||||| || |||||||||||| Sbjct 82803 CCACCACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAA 82862 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| ||||| || || | |||| || |||||||| || ||||| Sbjct 82863 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 82922 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || | || | | || | ||| |||| ||||| || Sbjct 82923 ATACCCTCCTTGTC-TTGAATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGAC 82981 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || || || || || ||||| Sbjct 82982 TTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 83029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252282450320