Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1030 192 7e-44 seq822 158 1e-33 >seq1030 Length=250146 Score = 192 bits (212), Expect = 7e-44 Identities = 538/817 (66%), Gaps = 23/817 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 124204 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 124145 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || ||||| ||||| | | || | | | |||| |||| |||| Sbjct 124144 GAAGTCAAAGGGGTTGCTAGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACGAGG 124090 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| ||||||| |||| ||| ||||| ||||| |||| ||| Sbjct 124089 AGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAGAAGG 124030 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| ||||| || || || |||| ||| ||||||| || || || | |||| Sbjct 124029 GCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATG 123970 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | || | || | || ||| || ||| Sbjct 123969 TCCTGGATCATCTGCTTGCTGGCACGACCCTTAAGGTGAGAGTGGAGGAGG--CAG-GCA 123913 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || |||||||||||| ||||| |||||||| || || |||||| ||| || ||| Sbjct 123912 AAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGC 123853 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | ||| | || ||||||||| ||| Sbjct 123852 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCC 123793 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || ||| ||||| |||| ||||||| |||||||||| | ||| | | ||| Sbjct 123792 TCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 123733 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 || ||||| | ||||| || ||| || || | ||||| || || | ||||| Sbjct 123732 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGG 123673 Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 127822 | | | | || || |||||||| | || ||||| || || || ||| Sbjct 123672 TAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAA 123613 Query 127823 TGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 |||| | | ||| || | ||| | ||||||| | || || ||| ||||| || Sbjct 123612 TGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGAC 123554 Query 127882 CTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940 ||| | | ||| | | | || ||||| ||||| ||||| || |||| || | Sbjct 123553 CTC-GCCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGA 123495 Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCCAGTCGT 127997 | || ||||| | | ||| ||| |||| | ||||| | |||||||||| Sbjct 123494 AGGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTCGT 123435 Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||||| |||||||| | |||||| |||||||| Sbjct 123434 GGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 123398 >seq822 Length=1165972 Score = 158 bits (174), Expect = 1e-33 Identities = 1092/1726 (63%), Gaps = 57/1726 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 798278 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTGCGAAGGTAGTACATGCCGGTCTTGAGAC 798219 Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 | | |||||| | | || | ||||| || | |||| | || || | |||| Sbjct 798218 CAAGTTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTAGGGTCCTTCATG 798160 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||||| ||||| || || |||||| || || || || ||||| | || Sbjct 798159 TGGATGTTCAGTGACTGGGACTGGTCAATGAAGGCACCTCGGTCAGCGGCCATCTGAACG 798100 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || | | || ||||| ||||| | || || ||| | |||| | ||||| Sbjct 798099 ACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGCCTTGACATCAGCAGGGATG 798040 Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 | || || || || || ||| | || ||| || | | ||||||| | | Sbjct 798039 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 797983 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCT----CCACGAGGTGCTTATTGACAACAACAAA 115877 ||||| ||||| || | || |||| | || ||| | |||||||| || Sbjct 797982 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCAGGGG----TTGACAACCTGGAA 797927 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 |||||| |||||| |||| | | |||||||||| ||||| ||||| |||||||| || Sbjct 797926 CTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 797867 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| |||| || || | || ||| || ||||| || || | ||| || ||||| || Sbjct 797866 GTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACG 797807 Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || ||| | | | | | | || || | | |||||||| || | | | Sbjct 797806 GATACCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGC 797749 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| || |||||||||||||| | || || || || |||| || || Sbjct 797748 TTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTG 797689 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| |||| | ||||| || |||||| ||||| || Sbjct 797688 GAGTAGGGACCCTCCTCCTTGGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAG 797632 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 || ||||| || || | || | | |||||| || || || | | || Sbjct 797631 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG- 797573 Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || |||| || || || || |||||||| ||||| || || || | ||| Sbjct 797572 CAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGCAT 797513 Query 116292 ATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 || || ||||| |||| || || || ||| ||||| | | | || || Sbjct 797512 GTTGCTGTTGCGAGC---CTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAG 797456 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-T 116407 || | ||||||| ||| || || | ||| | | | || | | | | || | Sbjct 797455 GTTGCGAATAACAACCTGACTGACCTCGTGCAACTTCTTGAAGTCGTAGCAG-GCCTCAT 797397 Query 116408 CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 | | |||| | ||| || || | || || || || || |||| | ||| || Sbjct 797396 CGTAGTTGATGAAGGAAGGCAGAGCTAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 797337 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 || ||||| |||||||| || |||| || ||||| |||||||| | ||||| Sbjct 797336 GGGCACAATACTCAATAATTTCAGTGCACAGGTTAGAACTTCGGATGGTGCCGAGGTTCT 797277 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 |||| || ||| |||||| ||||||||||||||||| | || | || ||||| | Sbjct 797276 TTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAG 797217 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTC 116644 | || | || ||||| || | ||| | | || | | || | | || | ||| || Sbjct 797216 TCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTT 797159 Query 116645 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAG 116703 | ||||||| |||||| ||| ||| || ||||| ||||| ||| || ||| || | | Sbjct 797158 G-CCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCA-CCGTAGCAGTCGGCG 797101 Query 116704 AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 116763 || || || || | || || | || | ||| | ||| || ||||| |||||| Sbjct 797100 AGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTC 797041 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 || || || || |||||||| || || ||| || || || || | || || | Sbjct 797040 ATAAAAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTA 796981 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || || | || | || || | || ||| | |||||| || || ||||| Sbjct 796980 CCGTGGTTCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAG 796921 Query 116884 ACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 | || | | ||| | || | | ||| |||| | ||||| | || || ||| Sbjct 796920 ATGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGATCGACATAGCGAGCAGTGTTGTT 796862 Query 116940 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGA 116997 || || |||||||| |||| | || | ||| || || || || ||| || || Sbjct 796861 GAAGACACGAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGA 796802 Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 117057 | | | || | | | ||| | || || ||||||||| || ||| ||| ||||| Sbjct 796801 GCC--AGTAGCACGAATACGGTGCACGTTCAGACCAATACCTCCAGCCATCTTGGAGATC 796744 Query 117058 TGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 117117 || || | ||||| | ||||||| || || || ||| |||| | ||| Sbjct 796743 ATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCGACC 796684 Query 117118 AGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 117177 | |||||| |||| ||| ||| || ||||||||||||||||| || || | || Sbjct 796683 AAGAAGCAAGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCA 796624 Query 117178 TGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGAC 117221 || || | | | ||| ||||||| | ||| ||||||||||| Sbjct 796623 TG--TGTAAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 796580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494692121960