Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1030 190 2e-43 seq1496 122 9e-23 seq486 118 1e-21 seq1259 114 1e-20 >seq1030 Length=250146 Score = 190 bits (210), Expect = 2e-43 Identities = 544/826 (66%), Gaps = 19/826 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 124188 TTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTG 124129 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | |||||| ||| | |||| | || ||||||| || | ||||| |||||| Sbjct 124128 CTAGCCTTGTAGACCTTCTCGTTGCCAAG-AG--CGACGAGGAGACGATCGGCGACGAAC 124072 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGC-AGCGCTTC 132800 || || || ||| |||| || |||| | || || || |||| || || || || Sbjct 124071 TCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAGAAGG-GCACAGGGGAGAGCCTC 124013 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||||| || ||||| |||| ||| || || |||| ||| ||| | | | Sbjct 124012 AGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATCATCTGCTT 123953 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| | || | | || | | | ||| |||||||| || | ||||| Sbjct 123952 GCTGGCACGACCCTTAAGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGGAGACCCTC 123893 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | || ||||| |||||| ||| |||| |||||||||||| || || || ||||| Sbjct 123892 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAG 123833 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || || | ||| || || ||||||| ||||| || || ||||| || || Sbjct 123832 CCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCAAC 123773 Query 133041 CAGGCGCTCGCCGAACGTGGCTTC--TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 || |||| | | || | || || | | ||| |||||| || | ||||| |||||| Sbjct 123772 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTG--GATCCATCGGATGGCCCAGTCGGCC 123715 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAG 133158 || | | || ||| || || || || |||||||| | | | | || ||| || | Sbjct 123714 TTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGA--AGAGGTAGGTTCGCTGGGCGG 123657 Query 133159 GAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | | ||||||||| ||||| || || | || || || | ||||||||| Sbjct 123656 GCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAATGGATGTTCTCCATCA 123597 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 ||| || |||||||| ||||| || |||||| | ||| || || | ||| |||| Sbjct 123596 TGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCACTGAATCGCT 123537 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 | || || || |||||||| || || || ||| ||||| ||||| || | ||| || Sbjct 123536 CAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAGGCAAGGATGTGAGAGA 123477 Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 ||| |||| | | | ||| ||| | ||||||| | |||||||| || | Sbjct 123476 CGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTCGTGGAGATCCTTGGAGAGAT 123417 Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||||| | ||||| || || ||||| || || |||||||| Sbjct 123416 CAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 123371 >seq1496 Length=1355525 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 510505 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 510564 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| | || Sbjct 510565 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 510623 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| ||||| || || | |||||||| | |||||| Sbjct 510624 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 510683 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| || || Sbjct 510684 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 510722 >seq486 Length=637844 Score = 118 bits (130), Expect = 1e-21 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || |||||| | || Sbjct 83029 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 82970 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || || | ||||| ||||| ||||| |||| | Sbjct 82969 GATACCATTGATAATG--TGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATC 82912 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| ||||| || || || |||| || || || |||||||| Sbjct 82911 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACA 82852 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | || || || ||||| || ||| Sbjct 82851 ACATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGT 82814 Score = 105 bits (116), Expect = 7e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| | || |||||| ||| Sbjct 82801 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACGATCACCCTTGAGGTCGAGTCCAGT 82742 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | ||||| ||||| || ||| | || | Sbjct 82741 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATC 82684 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| || || |||||||| || | |||||||| | |||||||| Sbjct 82683 AGCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACA 82624 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | || || || | || || || | | ||||||| Sbjct 82623 ACATCCAGAAGGAGTCAACTCTCCACCTCGTTCTCCGACTTCGCGGCGGCC 82573 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 ||| |||| || || ||||| |||||||| ||||| |||| || ||| | |||| | | Sbjct 83251 ATAGTCGTCAAGACACTCACTGGCAAAACTATCACTCTCGAGGTTGAGTCATCCGATACC 83192 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | | || ||| |||| ||||| ||||| || || | || || ||||| Sbjct 83191 ATCGACAATGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGC 83132 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | || ||||| || || || |||| || |||||| |||||||||||| || Sbjct 83131 CTGATCTTTGCTGGCAAGCAACTTGAGGACGGCCGAACCCTCGCCGACTACAACATTCAG 83072 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| | || || ||| | || || || Sbjct 83071 AAGGAATCTACCCTTCATCTCGTCCTCCG 83043 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| |||||||| |||| || ||| | || Sbjct 83539 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 83480 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| ||||| || ||| |||| || Sbjct 83479 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 83421 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| ||| ||||||||||| || |||| ||||||||| || ||||| Sbjct 83420 GCAACGTTTGATTTTCGCCGGCAAACAGCTTGAGGACGGCCGCACCCTCTCTGATTACAA 83361 Query 38423 CATCCAAAAGGA 38434 ||| || ||||| Sbjct 83360 CATTCAGAAGGA 83349 >seq1259 Length=620669 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 152542 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 152483 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 152482 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 152423 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 152422 ATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 152363 Query 38433 G 38433 | Sbjct 152362 G 152362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162602727040