Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1030 190 2e-43
seq1496 122 9e-23
seq486 118 1e-21
seq1259 114 1e-20
>seq1030
Length=250146
Score = 190 bits (210), Expect = 2e-43
Identities = 544/826 (66%), Gaps = 19/826 (2%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 124188 TTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTG 124129
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| |||||| ||| | |||| | || ||||||| || | ||||| ||||||
Sbjct 124128 CTAGCCTTGTAGACCTTCTCGTTGCCAAG-AG--CGACGAGGAGACGATCGGCGACGAAC 124072
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGC-AGCGCTTC 132800
|| || || ||| |||| || |||| | || || || |||| || || || ||
Sbjct 124071 TCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAGAAGG-GCACAGGGGAGAGCCTC 124013
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860
||||| || ||||| |||| ||| || || |||| ||| ||| | | |
Sbjct 124012 AGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATCATCTGCTT 123953
Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920
||| | || | | || | | | ||| |||||||| || | |||||
Sbjct 123952 GCTGGCACGACCCTTAAGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGGAGACCCTC 123893
Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980
|| | || ||||| |||||| ||| |||| |||||||||||| || || || |||||
Sbjct 123892 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAG 123833
Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040
||| || || | ||| || || ||||||| ||||| || || ||||| || ||
Sbjct 123832 CCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCAAC 123773
Query 133041 CAGGCGCTCGCCGAACGTGGCTTC--TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098
|| |||| | | || | || || | | ||| |||||| || | ||||| ||||||
Sbjct 123772 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTG--GATCCATCGGATGGCCCAGTCGGCC 123715
Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAG 133158
|| | | || ||| || || || || |||||||| | | | | || ||| || |
Sbjct 123714 TTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGA--AGAGGTAGGTTCGCTGGGCGG 123657
Query 133159 GAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216
| | | ||||||||| ||||| || || | || || || | |||||||||
Sbjct 123656 GCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAATGGATGTTCTCCATCA 123597
Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276
||| || |||||||| ||||| || |||||| | ||| || || | ||| ||||
Sbjct 123596 TGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCACTGAATCGCT 123537
Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336
| || || || |||||||| || || || ||| ||||| ||||| || | ||| ||
Sbjct 123536 CAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAGGCAAGGATGTGAGAGA 123477
Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393
||| |||| | | | ||| ||| | ||||||| | |||||||| || |
Sbjct 123476 CGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTCGTGGAGATCCTTGGAGAGAT 123417
Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||||| | ||||| || || ||||| || || ||||||||
Sbjct 123416 CAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 123371
>seq1496
Length=1355525
Score = 122 bits (134), Expect = 9e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 510505 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 510564
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| || ||| | ||
Sbjct 510565 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 510623
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| ||||| | || ||||| ||||| || || | |||||||| | ||||||
Sbjct 510624 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 510683
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| | || || || |||| || ||
Sbjct 510684 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 510722
>seq486
Length=637844
Score = 118 bits (130), Expect = 1e-21
Identities = 159/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || ||||| || | || |||||| | ||
Sbjct 83029 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 82970
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | || | | |||| || || | ||||| ||||| ||||| |||| |
Sbjct 82969 GATACCATTGATAATG--TGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATC 82912
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| ||||| | ||| ||||| || || || |||| || || || ||||||||
Sbjct 82911 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACA 82852
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| |||||| | || || || ||||| || |||
Sbjct 82851 ACATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGT 82814
Score = 105 bits (116), Expect = 7e-18
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || || |||||| | || |||||| |||
Sbjct 82801 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACGATCACCCTTGAGGTCGAGTCCAGT 82742
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | |||| | |||| || || | ||||| ||||| || ||| | || |
Sbjct 82741 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATC 82684
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || || || | ||| || || |||||||| || | |||||||| | ||||||||
Sbjct 82683 AGCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACA 82624
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||||| ||||| | || || || | || || || | | |||||||
Sbjct 82623 ACATCCAGAAGGAGTCAACTCTCCACCTCGTTCTCCGACTTCGCGGCGGCC 82573
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309
||| |||| || || ||||| |||||||| ||||| |||| || ||| | |||| | |
Sbjct 83251 ATAGTCGTCAAGACACTCACTGGCAAAACTATCACTCTCGAGGTTGAGTCATCCGATACC 83192
Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | | | || ||| |||| ||||| ||||| || || | || || |||||
Sbjct 83191 ATCGACAATGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGC 83132
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| || | || ||||| || || || |||| || |||||| |||||||||||| ||
Sbjct 83131 CTGATCTTTGCTGGCAAGCAACTTGAGGACGGCCGAACCCTCGCCGACTACAACATTCAG 83072
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| | || || ||| | || || ||
Sbjct 83071 AAGGAATCTACCCTTCATCTCGTCCTCCG 83043
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| |||||||| |||| || ||| | ||
Sbjct 83539 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 83480
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || || | ||||| ||||| || ||| |||| ||
Sbjct 83479 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 83421
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || | |||| ||| ||||||||||| || |||| ||||||||| || |||||
Sbjct 83420 GCAACGTTTGATTTTCGCCGGCAAACAGCTTGAGGACGGCCGCACCCTCTCTGATTACAA 83361
Query 38423 CATCCAAAAGGA 38434
||| || |||||
Sbjct 83360 CATTCAGAAGGA 83349
>seq1259
Length=620669
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | |
Sbjct 152542 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 152483
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||||||||| ||
Sbjct 152482 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 152423
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || || | || || ||| ||||||||||||||| |||
Sbjct 152422 ATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 152363
Query 38433 G 38433
|
Sbjct 152362 G 152362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500162602727040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |