Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq678 228 1e-54 seq1297 107 2e-18 >seq678 Length=783410 Score = 228 bits (252), Expect = 1e-54 Identities = 458/678 (68%), Gaps = 6/678 (1%) Strand=Plus/Minus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| |||||||| || ||||| | | |||||| | || | ||||| || || Sbjct 624086 CTTGTGTTTACGCTTGAACTCATTAACGAAGTGGTTGACCAGACGGTTGTCGAAGTCCTC 624027 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || || || | ||||| || |||||||| | |||||| | Sbjct 624026 ACCACCCAAGTGGGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 623967 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | || ||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 623966 AAGGAGAGACACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACC 623907 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| ||||||||||| || || || || || || || || || || || || Sbjct 623906 CTCAACCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCGTTGATGATTCG 623847 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| || || || || | ||||| || || ||||| || || |||||||| Sbjct 623846 GAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTGGCTTGACGCTGAGAATCGTT 623787 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| ||||| || || || |||| |||| ||| ||||| || || || || Sbjct 623786 GAAGTAGGCGGGGACGGTAACAACAGCGTTGTTGACAGTCTCGCCGAGGTAAGACTCAGC 623727 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827 | | || ||| ||||| || | ||| | || ||||| || | | || || || Sbjct 623726 GGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTGAAGGTCTTGGT 623667 Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887 || || || || ||||| || || | ||| ||| || | | || | ||| | Sbjct 623666 CTCGCCCTTGAACTCAACCTCGATAACGGGCTTA---CCACCCTTGTCGACGATCTTGAA 623610 Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947 | | | ||||| ||| | ||||||| | || | ||||| | || || | || Sbjct 623609 GGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGACCAATCAATCG 623550 Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007 ||| || || || || ||||| | ||||||||| || ||||||||| || || || || Sbjct 623549 CTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATAGCGACTTGGTTCTTGGCGGCATCACC 623490 Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || ||||| || | || || || ||||| | || ||||| ||||| || || || Sbjct 623489 AATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTCGGTTACCCTG 623433 Query 8068 GTCGTTCGCAATAATTTC 8085 ||||| ||||| || || Sbjct 623432 ATCGTTGGCAATGATATC 623415 Score = 199 bits (220), Expect = 5e-46 Identities = 375/545 (69%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| ||||| | ||| || | |||||| | | || Sbjct 307951 AGGTCCTCGAAACGGGCACGGGTGATGGACATGGTGAAGTCCTCACCGTCGAAGAGAGAG 308010 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| | || ||||| || |||||||| | Sbjct 308011 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAG 308068 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || |||||||| | | ||||||| |||||||| |||||| Sbjct 308069 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCGGAAAGGTCTTTCTTGGTTTTACGGC 308128 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 ||||| | | |||| |||| |||| | | |||||||| | ||||||||||| Sbjct 308129 CGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGTCCACCCAAGTGG 308187 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| |||| ||| || | ||||| | | || ||| Sbjct 308188 GTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACA 308247 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | ||||| ||||| || | ||| | |||| Sbjct 308248 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTA 308304 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| || || || || || || || || || || ||||| || | Sbjct 308305 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACG 308364 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || ||||| || ||||| |||||| Sbjct 308365 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGTCGCTGGTTGTCGTTGAAGTAG 308424 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | ||| ||||||||||| | | || || || || Sbjct 308425 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTACCGAGCTTGGTCTCGGCAATCTCC 308484 Query 7775 TTCAT 7779 ||||| Sbjct 308485 TTCAT 308489 >seq1297 Length=585845 Score = 107 bits (118), Expect = 2e-18 Identities = 172/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 72023 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 71964 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | ||| |||||||| ||||||||||| || || | || | Sbjct 71963 GTCATCAATGGAGAGAAGCGAGACATCAAAGGTACCACCACCGAGATCGTA---GACGAT 71907 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 71906 GATC-TGTCGCTCACCATCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 71848 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | |||| || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 71847 CGTTAACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 71788 Query 7695 GTTG 7698 | || Sbjct 71787 GCTG 71784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119851230040