Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq822 208 9e-49 seq1030 145 9e-30 >seq822 Length=1165972 Score = 208 bits (230), Expect = 9e-49 Identities = 1135/1791 (63%), Gaps = 59/1791 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| ||||||| || | | |||||| || || ||||| || || Sbjct 796523 CCTCAGCATATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGACGATATCGAGCGAGTC 796582 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||||||||||| || ||||||| | | || | || || | || || |||||| Sbjct 796583 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTTACACATGCCTCTCCCACACTCTTC 796642 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || |||||| |||| ||| ||| | | | | ||||| || Sbjct 796643 AACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTCGATATGAAGGACGAC 796702 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | ||||| |||| ||||||| |||||| ||||| ||| |||||| Sbjct 796703 AGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGA 796762 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACAA 111909 ||||| || || || | || | | | || | | ||| || | | ||||| | Sbjct 796763 GGTATTGGTCTGAACGTGCACCGTATTCGTGCTACT--GGCTCCTACATCGCCGGTACCA 796820 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | ||| ||| | || || |||| |||||||| || || ||| ||| || ||||||| Sbjct 796821 ACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATG 796880 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | | || | ||| ||| | | || || | || |||| || ||||| |||| Sbjct 796881 TCGATCAGGGTGGCAACAAGCGACCC---GGTGCTTTTGCCATCTACCTCGAGCCTTGGC 796937 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 || | ||| || | || |||||||| | || ||||| ||| | ||||||| || Sbjct 796938 ACTCTGATGTCTTCGAATTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGTG 796997 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 ||| || || ||| ||| || ||||| || ||||| || |||||| | ||||| ||| Sbjct 796998 CCCGTGACCTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGA 797057 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || | ||| | || | || || || || || || ||| |||| | |||| Sbjct 797058 ACGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGTG 797117 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGT 112261 ||||||| || || || ||| ||| ||||| |||| | | | | | | || ||| | Sbjct 797118 AGGAGTTCGAGGCTCTTTACGAAAAATACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT 797175 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | || | || | | ||| | || ||||| || |||| || |||||||| | || | Sbjct 797176 -CAAGGCTCAGAAGCTTTGGTATGCCATTCTTGAGGCTCAGACTGAGACTGGAAACCCTT 797234 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| || |||||||||| ||||| || |||||||| | || ||| Sbjct 797235 TCATGCTCTACAAGGATGCCTGTAACCGCAAGAGCAACCAAAAGAACCTCGGCACCATCC 797294 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 ||||| ||||| || || ||||| | || | | | | || ||| ||||| | Sbjct 797295 GAAGTTCTAACCTGTGCACTGAAATTATTGAGTATTGTGCCCCTGACGAGGTCGCTGTCT 797354 Query 112441 GTAACCTCGCATCAATCGCTCTCCC---------CAAGTATG-TGGATCCAGAGACAAAG 112490 | ||||| || || | ||||| || ||| || | || || | | | | Sbjct 797355 GCAACCTTGCCTCTCTAGCTCTGCCTTCCTTCATCAACTACGATGAGGCCTG---CTACG 797411 Query 112491 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGA 112550 || || | | || | ||||| || | | ||| | ||||| |||| Sbjct 797412 AC--TTCA-----AGAAGTTGCACGAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAG 797464 Query 112551 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 112610 | || || || ||||| || | ||||| || || ||| | ||||| Sbjct 797465 ATCATCGACGTGAACCACTACCCTGTCCCGGAGGCTCGCAACAGCAACATGCGCCACCGA 797524 Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATT 112669 || |||||||||||||| || || || || |||| ||| || || || ||| | || Sbjct 797525 CCCATTGGTCTCGGTGTTCAGGGCCTTGCTGATGCTTTCCTTGCTCTG-CGCATGCCCTT 797583 Query 112670 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729 || || ||| || || |||| || || || ||||| || || ||||| || Sbjct 797584 CGAGTCACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGC 797643 Query 112730 TCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 || || | || |||| ||| || ||||| || ||||| |||| || Sbjct 797644 CCTCACTGCCTCCGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTC 797703 Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849 ||| || || | || | || || || || |||||| | | || || | || Sbjct 797704 TCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTG 797763 Query 112850 CGACTGGGACGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 |||||||| ||| || || | | | ||||| | ||| | ||||||||||| | Sbjct 797764 GGACTGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGTATCCGTAACAGTCTGCTC 797821 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 | || || ||||| || ||| ||| | || || |||| || || || ||||| || Sbjct 797822 CTTGCTCCTATGCCTACTGCCAGTACCTCTCAGATTCTGGGCAACAACGAGTGCTTCGAG 797881 Query 112968 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 |||||||| | |||||||| | | || | |||||| || ||||| | ||||||| Sbjct 797882 CCCTACACCTCCAACATCTACCAGCGACGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAA- 797940 Query 113028 AAGCATCTCGTGG----ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 113083 | || || | | ||||| || || ||||| |||||| | | ||||||| | Sbjct 797941 ---CCCCTGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAA 797997 Query 113084 TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAA 113143 | ||| | | | |||||||||||| || ||| | || || | ||| | || Sbjct 797998 CCGCATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCTGATGTCAA 798057 Query 113144 GAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGA 113203 | |||| || |||||||| || | | ||| || | |||||||| || Sbjct 798058 GGCTCTGTATAAGACTGTTTGGGAGATTTCTCAGCGCCAGGTCGTTCAGATGGCCGCTGA 798117 Query 113204 TCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACG 113261 || ||| ||||||||| | |||| ||| |||| | |||| | || ||| Sbjct 798118 CCGAGGTGCCTTCATTGACC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCTACG 798175 Query 113262 ATGTCCAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGAT 113320 ||| |||| || | ||||||| | | || | ||||| |||||||| || || || Sbjct 798176 ATGGGCAAGATCACCAGTATGCAC-TTTGCAGGCTGGAAACTTGGTCTCAAGACCGGCAT 798234 Query 113321 GTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 113371 ||| ||||| || | |||| || || |||||||||| | |||| Sbjct 798235 GTACTACCTTCGCACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 798285 >seq1030 Length=250146 Score = 145 bits (160), Expect = 9e-30 Identities = 352/522 (67%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 |||||||| || ||| | |||||||| |||||| | |||| ||||| | || | | | Sbjct 123398 TGGACTGCCGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAATCGCCTGACT 123457 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 | |||| || ||| | ||||||| || ||||| |||| || ||||| ||| Sbjct 123458 GCCGATGAGCAGTTCTTCGTCTCTCACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATT 123517 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| || | | || || ||||| || |||| | || || | | Sbjct 123518 GTCAACGAGAACCTCGTTGAGCGATTCAGTGGCGAGGTCCAGATCCCC-GAGGCTCGTTG 123576 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | | || | |||| ||| | | | ||| ||||| ||| |||| Sbjct 123577 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCATTCCGAGACCTACTCCCTTCTCA 123635 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 102110 | |||| || || ||||| || || ||| | | ||||| | ||||| | || Sbjct 123636 TTGACACCTACATCAAGGAGCCCGCCCAGC-GAACCTACCTCTTCAACGCCATTGAGACC 123694 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCG 102169 |||| || || | |||||| || || ||||| || ||| | | | || | | | Sbjct 123695 ATTCCTTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCC 123754 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 | ||||||| |||| ||| | || || || ||||||||||||||||||| ||| | Sbjct 123755 T-CCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGC 123813 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 ||| | |||| | |||||||||||||| ||||||||||| || || ||||||||| Sbjct 123814 CTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAA 123873 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| ||||||||||| ||||| |||||| || ||||| Sbjct 123874 CGAGCTCATCTCTCGTGATGAGGGTCTCCACACTGACTTTGC 123915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729744614320