Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq822 233 2e-56 seq1537 87.8 2e-12 >seq822 Length=1165972 Score = 233 bits (258), Expect = 2e-56 Identities = 1143/1792 (64%), Gaps = 69/1792 (4%) Strand=Plus/Minus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TG 109457 |||| | |||||| || ||||| || || ||||||||| ||||| || | || | || Sbjct 798255 GCCTGTGTGCGAAGGTAGTACATGCCGGTCTTGAGACCAAGTTTCCA-GCCTGCAAAGTG 798197 Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTG 109517 ||| | || ||| | || || || ||| | ||||| ||||| ||||| Sbjct 798196 CATACTGGTGATCTTGCCCATCGTAGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTG 798137 Query 109518 ATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCT----AATTT 109573 || ||||| ||| || ||||| ||||| | | || | | ||| ||| | Sbjct 798136 GTCAATGAAGGCACCTCGGTCAGCGGCCATCTGAACGA----CCTGGCGCTGAGAAATCT 798081 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| |||||||| |||| | ||||| |||| | || |||| ||||| ||||| | Sbjct 798080 CCCAAACAGTCTTATACAGAGCCTTGACATCAGCAGGGATGTTGGGAATGTTCTGAATGG 798021 Query 109634 AGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTT 109690 | ||| |||| | | || | | |||||| | | ||||| ||||| | | Sbjct 798020 AACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGA 797964 Query 109691 TGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGT 109746 || || | |||| || | ||||| || || |||||||| || ||| Sbjct 797963 CAAGGTCCTTGAGCAACCAGGGG----TTGACAACCTGGAACTCACCAGCGAGGACACGT 797908 Query 109747 CGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCA 109806 || |||||||||| | |||||||| ||||| ||||| |||||||| || || || | Sbjct 797907 CGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAG 797848 Query 109807 GTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACC 109866 || || || ||||| ||||| | ||| |||||||| |||| ||| | ||||| || Sbjct 797847 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATACCGTGTGTCTTGACT 797788 Query 109867 CGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATA 109926 ||| || | | ||||| || | | || | || | | |||||| Sbjct 797787 TCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATG 797734 Query 109927 TCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCA 109986 || || || | |||||||| || ||||| |||||||| | ||| | ||||| Sbjct 797733 TCGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCC 797674 Query 109987 ACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATG 110045 ||| ||||| || | | | || | | || || || || || || ||||| || || || Sbjct 797673 TCCTTGGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 797615 Query 110046 AGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACA 110101 || |||| |||| ||| | |||||||| | | || || || || Sbjct 797614 C---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCAAGGAAAG 797559 Query 110102 CATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAG 110161 |||| || || ||||||||||||||||||||||| || || |||||| | |||| Sbjct 797558 CATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAG 797499 Query 110162 CAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCT 110221 | || ||||| ||| |||||||| | || || || | ||| || Sbjct 797498 CCTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAGGTTGCGAATAACAACCT 797439 Query 110222 TCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTG 110280 ||| || || | || | | | ||| | | | || | || |||| | Sbjct 797438 GACTGACCTCGTGCAACTTCTTGAAGTCGTA-GCAGGCCTCATCGTAGTTGATGAAGGAA 797380 Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || ||||| | ||| ||||| ||||| |||| |||||| | | || || | | Sbjct 797379 GGCAGAGCTAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATA 797320 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 ||||| || |||| ||| ||||| ||| || | |||||| || || ||| | Sbjct 797319 ATTTCAGTGCACAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGG 797260 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 || || |||||||| ||||||||| | ||| | ||||| || ||||| | || |||||| Sbjct 797259 TTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATG 797200 Query 110461 GCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTAC 110517 || | ||| | | || | | | | | ||| |||| | | || |||| |||||| Sbjct 797199 GCATACCAAAGCTTCTGAGCCTTG-ATAGTCTTGCG--ACCCTTGCCCTCCTTCTCGTAT 797143 Query 110518 TTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCG 110577 || ||| | |||| || |||| ||||| || | || || || || | Sbjct 797142 TTTTCGTAAAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTG 797083 Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 || || | || | ||| | || || ||||| | |||||| || || ||||| ||| Sbjct 797082 GGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATC 797023 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 || | || ||| ||||||||| ||| |||| || | ||| ||||| || || Sbjct 797022 CAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGA 796963 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT------GGAT 110751 || | || || | || ||| |||||||| || ||||| |||| || | || | Sbjct 796962 TCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGT 796903 Query 110752 CCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATA 110811 | ||| | |||| || | |||||||| || ||| |||||||| | |||||| Sbjct 796902 CGCTTGTTGCCACCC---TGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATA 796846 Query 110812 GGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATG 110871 |||| || || | |||| ||| || ||||| || ||| | | |||||||| Sbjct 796845 GGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATA 796786 Query 110872 TCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAG 110930 ||| | | || ||||||||| || ||| ||| || ||||| ||| |||| Sbjct 796785 CGGTGCACGTTCAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAG 796727 Query 110931 TGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACAT 110990 ||| | || || || ||||| || |||| | | | | |||||||| |||| Sbjct 796726 AGTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAA 796667 Query 110991 CTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG 111050 || || |||| || || || ||||||||||| || | ||||| || | ||| ||| Sbjct 796666 TTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATG--TGTAAAGAATTTG 796609 Query 111051 --GGACATCTTGTTGTATGTGTC---GAGTGCGGAGGGTACATCTTTACCGTGAATACCA 111105 ||||||| ||||||||| || || | || | | ||| | ||| |||||| Sbjct 796608 CTGGACATCAGGTTGTATGTCTCCAAGACT-CGCTCG--ATATCGTCACCCCAGATACCA 796552 Query 111106 ATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157 | | || ||||||| ||||| |||||| |||| | ||| || |||| Sbjct 796551 ACAGACACACGCATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAA 796500 >seq1537 Length=2452528 Score = 87.8 bits (96), Expect = 2e-12 Identities = 248/375 (66%), Gaps = 22/375 (6%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 |||||| ||||| || ||||||| |||||| | || ||| ||||||||||| Sbjct 442020 GAAACCATCCATCTCAGTGAGAATCTGGTTCAAAGTTGCTTCCCGCTCATCGTTACCAC- 442078 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA---------GCGTCAATCTCATCGATGAA 11702 || | | || ||| || || || | || ||||||||||| || ||||| Sbjct 442079 CAAATCCCCGGCC--ACTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCGTCAATGAA 442136 Query 11703 TACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCC 11762 | ||| || || ||| |||| | | |||| || || | ||||| | || Sbjct 442137 GATGATGCAAGGGGCGTTTTTACGTCCTTCGGCGAACAGATCTCTCACACGTGAAGGGCC 442196 Query 11763 AACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTA 11820 ||||| || ||||| |||||||| | | | || | ||||||| |||||| || Sbjct 442197 GACACCGACAAACATTTCAACGAATTCAGAACCGCTCA-CACTGAA-GAAGGGTACTCCT 442254 Query 11821 GACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGA 11880 ||||| || || |||| || || | |||||||| |||||||| | |||||| | Sbjct 442255 GACTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCAGTACCAGGAGGACCAGCTAAG 442314 Query 11881 AGGGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGG 11937 | || || || |||||||||||||| || | || | ||| |||| ||| ||| Sbjct 442315 ATAGCACCTCGAGGGATCTTGGCACCCAGCTTTTCGAATT---TCTCGGGCTGCTTCAGG 442371 Query 11938 AAGTCCACAATCTCC 11952 ||| ||||| |||| Sbjct 442372 AAGCTCACAAACTCC 442386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588963992251800