Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq680 107 2e-18 >seq680 Length=1261114 Score = 107 bits (118), Expect = 2e-18 Identities = 316/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Minus Query 154629 CAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA--ATCCAAGCATACC 154686 || || ||| | || | |||||||||| ||| || || | || ||| | || |||| Sbjct 733527 CAGCCCAACTCTGGTGCTCAGGGTGAGTTTGCTGGTCT--TCGCTGCATCAAGGCTTACC 733470 Query 154687 ATCAAGGATCAGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGA 154745 | | ||| || || | ||||| |||| || || | || || | || || || || Sbjct 733469 A-CGAGGCTCGTGATGGAGATAAGCGAAAGGTCTGCCTTATCCCTGTTTCTGCTCACGGT 733411 Query 154746 ACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT 154805 || || |||||| ||||| |||||| || ||||| ||||| |||||| ||||| | | Sbjct 733410 ACCAACCCTGCTTCTGCTGCCATGGCTGGTATGAAGGTTGTTACTGTCAAATGTGACGGT 733351 Query 154806 GA---TGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAA 154862 | ||||||| | || || | ||||| || || ||| | || | ||| Sbjct 733350 AAGACTGGTAACCTGGATATTGAGGATCTTAAGGCCAAGTGTGTCAAGCATGCTGATGAG 733291 Query 154863 CTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGA 154922 || | ||| ||| ||||||| || ||||| ||||| ||||| | | || | Sbjct 733290 CTTGCTGCTATCATGGTTACATATCCCTCTACTTTCGGTGTCTTTGAGCCCGAGATCAAG 733231 Query 154923 CAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 || | ||| | | || || || |||| |||| || || | || || || || | Sbjct 733230 CAAGTCTGTGATCTTGTCCACGAGCATGGCGGTCTCGTCTACATGGACGGTGCCAACATG 733171 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAAC 155042 || || ||| | || || | || |||| ||||| ||||| || ||||| ||| Sbjct 733170 AACGCCCAGATCGGTCTCTGCAGCCCCGGTGACATCGGTGCTGATGTCTGCCATCTCAAC 733111 Query 155043 TTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGT 155102 | || || || ||||||||||| || || ||||| ||||| || || || || || | | Sbjct 733110 CTCCACAAGACCTTCTGTATTCCCCACGGTGGTGGTGGTCCCGGTGTTGGCCCCATTGCT 733051 Query 155103 GT 155104 || Sbjct 733050 GT 733049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579200991299040