Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq486 96.9 3e-14 seq1297 95.1 1e-13 >seq486 Length=637844 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || |||||||||||| ||| || ||| ||||| || || || |||| Sbjct 83039 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCG 83098 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || |||||||| || || ||||| || || | |||||||||||||| || || || Sbjct 83099 GCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTC 83158 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAG 563434 || || || || ||| || || || || ||||| | ||| | | ||||||| Sbjct 83159 CTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATC-GGATGACTCAACCTCGAGAG 83217 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 | | |||||| ||||| || || || |||| Sbjct 83218 TGATAGTTTTGCCAGTGAGTGTCTTGACGA 83247 >seq1297 Length=585845 Score = 95.1 bits (104), Expect = 1e-13 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | ||||||||||| || ||||| ||||| ||| || || || || |||||| | Sbjct 71248 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTCGAAATTCTC 71307 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| ||||| |||||| ||| || || ||||| || | ||||| || ||| | | Sbjct 71308 GTCAACGATCAGGGTAACCGAATCACCCCCTCTTACGTCGCCTTCACCGAGGATGAGCGT 71367 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTT 550178 || ||||| || || || || | || ||| | | ||| || || || ||||||| Sbjct 71368 TTGGTTGGAGACGCCGCCAAGAACCAGGCCGCCGCTAACCCCACGAACACTATTT 71422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029209745364190