Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1259 86.0 5e-12 seq486 86.0 5e-12 >seq1259 Length=620669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || || ||| |||| | || || | ||||||||| || || ||| Sbjct 152364 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGCTTACCAGCGAAGATC 152423 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| |||| ||||| |||||||||||| Sbjct 152424 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 152458 >seq486 Length=637844 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||||||||| || | || |||| || | ||| || ||||| || Sbjct 83348 CTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAA 83407 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || || ||||| | ||| | |||||||||||| |||||| || || Sbjct 83408 AATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 83467 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | ||| ||||| | || || || || || ||||| || || || Sbjct 83468 GTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGAC 83527 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 83528 GAAGATCTGCAT 83539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || || || ||||| || || ||| |||| |||| || Sbjct 82821 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCA 82880 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || || || || |||||||||||||| | |||| ||||||||||| | Sbjct 82881 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTGA 82940 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | | || || | ||| || |||| ||||| || ||| Sbjct 82941 ATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTT 83000 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || || ||||| Sbjct 83001 CCAGTGAGGGTCTTGACGAAGATTTGCAT 83029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380930027793813