Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq822 363 3e-95 seq1030 158 2e-33 >seq822 Length=1165972 Score = 363 bits (402), Expect = 3e-95 Identities = 1235/1891 (65%), Gaps = 106/1891 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| ||||| || ||||||||||||||||| Sbjct 798282 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTGCGAAGGTAGTACATGCCGGTCTTG 798223 Query 212613 AGGCCCTTGCCCCAGCCGTGCAT-GTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTG 212671 || || |||||| |||| |||||| |||| || || | || | || Sbjct 798222 AGACCAAGTTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTAGGGTCCT- 798165 Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731 |||| |||| | |||||| ||||| |||||| ||||| | | | Sbjct 798164 -TCAT----GTGG---------ATGTTCAGTGACTGGGACTGGTCAATGAAGGCACCTCG 798119 Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 |||||||||||| | | || | | ||| || | |||||| || ||||| | | | Sbjct 798118 GTCAGCGGCCATCTGAACGACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGC 798059 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC-- 212849 |||| || | |||| | ||| |||||||| | || || || ||||| Sbjct 798058 CTTGACATCAGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAGCAA 798006 Query 212850 TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGG 212903 || | ||| ||| | ||| ||| || ||| || | ||| ||||| || Sbjct 798005 TG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAAC 797947 Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 |||||||| | |||||| ||||| | ||| || | | |||||| | ||| || ||| Sbjct 797946 CAGGGGTTGACAACCTGGAACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTG 797887 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 |||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 797886 TAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGA 797827 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TCTGC 213079 || | || |||||||| | | ||||| | | ||| | ||||| ||| | Sbjct 797826 GCAAGGAGCAGACTGTTACGGATACCGTGT--GTCT-TGACTTCCTCTCGAAGAGTCT-C 797771 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139 ||||||||| | |||| | ||| |||||||||||||| ||||| | ||| Sbjct 797770 CCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATGTCGAACTGGAGGAT 797720 Query 213140 GCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCA 213195 || |||| |||| ||||| | | | ||||||||| || | ||||||||||| Sbjct 797719 ACC----CTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCA 797664 Query 213196 GCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGC 213254 ||| ||| ||| || |||||||||| ||||||||| || || |||| | |||||||| Sbjct 797663 GCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGC 797605 Query 213255 TTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCC 213314 | ||||| || ||| ||||||||| || |||| ||||||| || ||| Sbjct 797604 TCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGGCCC 797545 Query 213315 TGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGG 213373 || || |||| || ||||||| ||| | || ||| ||| |||| |||| | || Sbjct 797544 TGAACACCGAGACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCGGGACAGG 797486 Query 213374 GTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGC 213433 ||| ||| ||||||||||||||| |||||||| | | || | |||| | | Sbjct 797485 GTAGTGGTTCACGTCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTCGTG 797426 Query 213434 CAGGTACTCGTGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAGGGC 213487 || || | ||||| |||||| | ||| | | || |||||| || Sbjct 797425 CA---AC---TTCTTGAAGTCGTAGCAGGCCTCATCGTAGTTGATGAAGGAAGGCAGAGC 797372 Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGT 213547 | ||| |||||||| || || ||||| | || | | ||||| || || || || Sbjct 797371 TAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGT 797312 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-G 213606 ||||||||| | |||||||||||| ||||||| ||| ||| ||||| | || | Sbjct 797311 GCACAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGG-TTGCTCTTGCGGTTACAGG 797253 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--T 213664 |||||||||||||||| | ||| || ||||| ||| | | | || | |||| Sbjct 797252 CATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAA--TGGCATA 797195 Query 213665 CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTC 213724 ||| || | | ||||||| | | ||| | | | | |||||| | ||| Sbjct 797194 CCAAAGCTTCTGAGCCTTGA-TAGTCTTGCGACCCTTGCCCTCCT--TCTCGTATTTTTC 797138 Query 213725 GTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACA 213784 ||| || | | ||| || | || || | | || || || || ||| || Sbjct 797137 GTAAAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCA 797078 Query 213785 CATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAG 213844 ||| || ||||||| |||| | | || | || ||| || || || |||| ||| || Sbjct 797077 CATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAG 797018 Query 213845 CGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAG 213904 ||| ||||||||| | || | ||| ||| || ||| || || ||||| || Sbjct 797017 GGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAG 796958 Query 213905 AAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCT 213961 || || |||| || | |||||| ||||| | |||||||||||| || || | || | Sbjct 796957 GAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT 796898 Query 213962 CTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTA 214017 ||||| ||||| || | | | || | || ||||||||| || || | || | Sbjct 796897 GTTGCCACCCTGATCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAA 796842 Query 214018 CCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGT 214074 | | |||||||| ||| |||||||| || || || || ||||| | || | | | Sbjct 796841 CAACGCCGTTGGA-TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGG 796783 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 ||| | | ||| || || || || || ||||||||||||||| ||| | | | || Sbjct 796782 TGCACGTTCAGA--CCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAG 796725 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || |||||| | || ||||| || | | | | ||||||||| || | | Sbjct 796724 TATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATT 796665 Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254 ||||| | | |||| |||||| || ||||| |||||| | | || ||| | | Sbjct 796664 GGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGG 796605 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAG-CG 214313 | | || |||| ||||||| |||| ||| |||| ||| | || | Sbjct 796604 ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAGATACCAACAGACA 796545 Query 214314 CACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGC--CCTTGAGCAGGT 214371 || | ||| | ||| ||||| |||| ||| | ||| | | |||||| |||| Sbjct 796544 CA-CGCATGATCATATGCTGAGGCCGCTCGA--CAATCTTACCGTCAATCTTGAGGAGGT 796488 Query 214372 AGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 |||| ||||||| ||||||||| |||||||| Sbjct 796487 AGGATCGCTCCAAAGTCTTGAAGCCAAAGTA 796457 >seq1030 Length=250146 Score = 158 bits (174), Expect = 2e-33 Identities = 482/738 (65%), Gaps = 29/738 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 124207 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 124148 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| ||||||||| | || || ||| | || ||| | | || | Sbjct 124147 CATGAAGTCAAAGGGGTTGCTAGCCTTGTAGACCT-TCTCGTTGCCAAGAGCGACGAGGA 124089 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| || || | ||||||| |||||||| | |||| Sbjct 124088 GACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAGAAGGG 124029 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||| | ||||| ||||| ||||||| ||| || ||||| || | || Sbjct 124028 -CACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATG 123970 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC--------AGGTGCTTGGCATAGAGCA 48128 | || ||| || | || | || | ||||| | | ||| | Sbjct 123969 TCCT-------GGA-TCATCTGCTTGCTGGCACGACCCTTAAGGTGAGAG---TGGAGGA 123921 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||||||||| |||| | || || || || ||||||| ||||||||||| | Sbjct 123920 GGCAGGCAAAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCA 123861 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 | || ||||||| || | || ||||||||||| || | || || | || ||||| Sbjct 123860 GGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGA 123801 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | || | || || | || ||| || Sbjct 123800 AGATACCCTCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCT 123741 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 123740 GGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGT 123681 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 |||||| | | | || | | ||| | ||||| | |||| || | || Sbjct 123680 TGAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAG---GGAGT 123624 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | |||| || || | ||||| || ||||||||| ||||||||| | ||||| Sbjct 123623 AGGTCTCGGAATGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 123564 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 | ||| || || ||||| ||| | || ||||| ||||| || ||||| || | Sbjct 123563 GGATCTGGACCTCGCCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGG 123504 Query 48546 CAGCAAAGAAGGCAAGGA 48563 |||| ||||||||||||| Sbjct 123503 CAGCGAAGAAGGCAAGGA 123486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513808375040