Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq822 282 8e-71 seq1030 197 3e-45 >seq822 Length=1165972 Score = 282 bits (312), Expect = 8e-71 Identities = 849/1284 (66%), Gaps = 59/1284 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || ||||||||||||||||||||||| |||||| ||||||||| ||| | |||||||| Sbjct 797649 GTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 797591 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||| ||||| | | ||||| | || || || ||||| || |||| | Sbjct 797590 TGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCAGCAAGGCCCTGAACACCGAGA 797533 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||| | | ||||| | ||| || || || || || || ||| | Sbjct 797532 CCAATGGGTCGGTGGCGCATGTTGCTGTTGCGA--GCCTCCGGGACAGGGTAGTGGTTCA 797475 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 ||||||| | ||||| ||||| || | | || | | |||||| || ||||| Sbjct 797474 CGTCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTCGTGCAACTTCT--- 797418 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 |||| | | | | | |||| || | | | || || || || | Sbjct 797417 ---TGAAGTCGTAGCAGGCCTCATCGT--AGTTGATGAAGGAAGGC----AGAGCTAGAG 797367 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||| ||||| || || || |||||||| | ||||| || || || || || | Sbjct 797366 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCACA 797307 Query 221772 GGTTGCTGCACTT--GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 |||| | |||| |||||| || |||| || || || |||||| || || || Sbjct 797306 GGTTA--GAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 797249 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| || || |||||||| ||||||| | ||||| | ||| || Sbjct 797248 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAG 797189 Query 221890 TTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGG 221942 | |||| || | | ||| | |||| | | |||| ||||| | Sbjct 797188 CT-TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTATTTTTC-------G 797137 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 || ||||| | | |||| |||||||| ||| | ||||| || ||| | ||| | Sbjct 797136 TAAAGAGCCT--CGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 797079 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 ||||||| |||||| ||| | || || | || ||| || || || |||||||| | Sbjct 797078 ACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAA 797019 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | || | || || || | || || ||||||| |||| ||| || | ||||| | Sbjct 797018 GGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAA 796959 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 || || || | |||| |||||| ||||| || |||| ||| | ||| |||||||||| Sbjct 796958 GGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 796899 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 |||||||||||||||| | ||| ||| | |||||||| ||||| | || || Sbjct 796898 TGTTGCCACCCTGATCGA-CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACA 796840 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 | ||||||||| ||||||||| || ||||| | || || | | ||| | Sbjct 796839 ACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCAC---GAATACGG 796783 Query 222302 -GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| || || ||||| || || || ||||||||||| ||| |||||||||| Sbjct 796782 TGCACGTTCAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 796723 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||||||||| ||| ||| ||||| | | | || || ||||| |||| || Sbjct 796722 TCGTAGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGG 796663 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | || || ||||| || || |||||| ||| ||||||||| | || ||| Sbjct 796662 GGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGAC 796603 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGA-ATCTGCATGGCGC 222536 ||||| | ||| ||||| | ||||| |||| | ||| ||| || | | || | | | Sbjct 796602 ATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAGATACCAACA-GACAC 796544 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594 | | |||| ||| | ||| |||| ||| ||| || | | || ||| ||||| Sbjct 796543 A-CGCATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAATCT--TGAGGAGGTA 796487 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654 ||| |||| ||||||||| |||||||| | | | || || | | | | || | Sbjct 796486 GGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAAT 796427 Query 222655 GGCGGCGTCCAGCTCCGACTTGTG 222678 ||||| ||||| |||| |||||| Sbjct 796426 GGCGGAGTCCAACTCCTCCTTGTG 796403 Score = 96.9 bits (106), Expect = 6e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | |||||| | ||| || ||| | || Sbjct 797941 GTTGACAACCTGGAACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 797882 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||||| || ||||| || ||||| || || | Sbjct 797881 CTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAG 797822 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295 ||||||||||| || | ||| | | |||| || || || || | |||||| || Sbjct 797821 GAGCAGACTGTTACGGATACCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCA 797762 Query 221296 G 221296 | Sbjct 797761 G 797761 >seq1030 Length=250146 Score = 197 bits (218), Expect = 3e-45 Identities = 397/586 (68%), Gaps = 11/586 (2%) Strand=Plus/Plus Query 25463 TAACACACAAAGATATAT--GGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGC 25520 ||||| || | |||| || || | ||||||||||||||| | || |||||| || Sbjct 123346 TAACAGACCATGATAGATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGC 123405 Query 25521 CGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCA 25580 ||| ||||||||||| ||||||| | ||| |||| || || | | ||| | Sbjct 123406 CGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAATCGCCTGACTGCCGATGA 123465 Query 25581 GCATTTTCTCAAGT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGA 25637 ||| || || | || | | || ||||| || |||||||||||||| || ||||| Sbjct 123466 GCAGTTCTTCGTCTCTCACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGA 123525 Query 25638 GAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGG 25697 ||| || ||| |||||| | || || ||| | ||||| || |||||||| Sbjct 123526 GAACCTCGTTGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGG 123585 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---AC 25754 |||||||| || || || | || || ||| || || ||||| || || Sbjct 123586 CTTCCAGATCATGATGGAGAACATCCATTCCGAGACCTACTCC---CTTCTCATTGACAC 123642 Query 25755 GTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAG 25814 ||||| | || |||| || || || || ||||| ||| ||| || | Sbjct 123643 CTACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTCAACGCCATTGAGACCATTCCTTG 123702 Query 25815 CATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGG 25874 |||| | |||||| |||||||| |||||| | || | | | |||| Sbjct 123703 CATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGC 123762 Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 | |||| || || ||||| |||||||| ||||| ||||| ||||||||| | ||||| | Sbjct 123763 CCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTC 123822 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 ||||||||||||||| || || ||||||||| ||| ||| |||||||||||||| Sbjct 123823 TATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCAT 123882 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | | || ||||||||||||| || ||||||||||| ||| || Sbjct 123883 CTCTCGTGATGAGGGTCTCCACACTGACTTTGCCTGCCTCCTCCAC 123928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928825863176640