Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq486 120 2e-21
>seq486
Length=637844
Score = 120 bits (132), Expect = 2e-21
Identities = 160/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || || ||| ||| || | || || || | |||||
Sbjct 82808 ACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 82867
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | || ||||||||||| ||||| || || || || |||||||| |||||||| ||
Sbjct 82868 TCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 82927
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||||||||||| || ||| ||||| ||||| | || | | ||| |
Sbjct 82928 CTCCTTGTCTTGAATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 82986
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || || ||||| ||||| ||||| |||||
Sbjct 82987 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 83026
Score = 120 bits (132), Expect = 2e-21
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| || |||||||| ||| ||| || || || || || || || ||
Sbjct 83036 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGT 83095
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | || ||||||||||| |||||||| || || || || ||||||||||| || ||
Sbjct 83096 TCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACC 83155
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || |||||| |||||| || || ||||| | || | || || |
Sbjct 83156 CTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAA-CCTCGA 83214
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
| || |||||||| || ||||| ||||| ||||
Sbjct 83215 GAGTGATAGTTTTGCCAGTGAGTGTCTTGACGA 83247
Score = 105 bits (116), Expect = 4e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || ||||| ||||| || ||||||||||| |||||||| || || || |||||
Sbjct 82646 ATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTT 82705
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| |||||||| || || || ||||| ||| || |||||||| ||
Sbjct 82706 GTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGAT 82765
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||| |||||||| ||
Sbjct 82766 CGTCTTTCCGGTGAGAGTCTTGACGAAAATCTG 82798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268109238496388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |