Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq486 120 2e-21 >seq486 Length=637844 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || | || || || | ||||| Sbjct 82808 ACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 82867 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || ||||||||||| ||||| || || || || |||||||| |||||||| || Sbjct 82868 TCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 82927 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||| || ||| ||||| ||||| | || | | ||| | Sbjct 82928 CTCCTTGTCTTGAATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 82986 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || ||||| ||||| ||||| ||||| Sbjct 82987 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 83026 Score = 120 bits (132), Expect = 2e-21 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || || || || || || || || Sbjct 83036 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGT 83095 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || ||||||||||| |||||||| || || || || ||||||||||| || || Sbjct 83096 TCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACC 83155 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || |||||| |||||| || || ||||| | || | || || | Sbjct 83156 CTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAA-CCTCGA 83214 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 | || |||||||| || ||||| ||||| |||| Sbjct 83215 GAGTGATAGTTTTGCCAGTGAGTGTCTTGACGA 83247 Score = 105 bits (116), Expect = 4e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||| || ||||||||||| |||||||| || || || ||||| Sbjct 82646 ATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTT 82705 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| || || || ||||| ||| || |||||||| || Sbjct 82706 GTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGAT 82765 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||||||||| |||||||| || Sbjct 82766 CGTCTTTCCGGTGAGAGTCTTGACGAAAATCTG 82798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268109238496388