Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq822 212 2e-49
seq1030 149 2e-30
seq172 105 2e-17
seq678 89.7 2e-12
>seq822
Length=1165972
Score = 212 bits (234), Expect = 2e-49
Identities = 586/884 (66%), Gaps = 27/884 (3%)
Strand=Plus/Minus
Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690
|| || | ||| ||| ||||||||||||||| ||||||||| | ||||| |||||
Sbjct 797328 TACTCAATAATTTCAGTGCACAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTG 797269
Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750
|| | |||||| ||||||||||| || ||| | ||| |||| ||||| |||| ||
Sbjct 797268 CTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCC 797209
Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810
|| ||||| ||| || | | || || || |||| |||| ||| |
Sbjct 797208 TCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTC 797149
Query 155811 TCATATTT--CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868
|| ||||| | || | ||| | | | ||||||||||| || || || |||||||
Sbjct 797148 TCGTATTTTTCGTAAAGAGCCTC--GAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGC 797091
Query 155869 ACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATA 155925
||| | |||||| | ||| | ||| | || || | | |||||| |||||| |
Sbjct 797090 ACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATAAAAA 797034
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985
|||| ||||| || ||| ||||| | || |||||| | ||||| |
Sbjct 797033 GATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGT 796974
Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045
|||| || || || | |||||| | ||||| || ||||| || || || ||||
Sbjct 796973 TCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 796914
Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102
|| ||| | |||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct 796913 AAGCACCGGGTCGCTTGTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACAC 796854
Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162
|||||||||| || || ||||| || || ||||| ||| || | || |||| |
Sbjct 796853 GAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAG 796794
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221
|||| | || | | || |||||||| || | |||| || || || || ||
Sbjct 796793 CACGAATACGGTGCACGTTCAGACCAATACCTCCAG-CCATCTTGGAGATCATGGCACAG 796735
Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAG---TAGATAG 156278
||| | ||||| | | || || |||||| || || | ||| || | ||| ||
Sbjct 796734 GTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCAT--ATCGACCAAGA-AG 796678
Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338
|| || ||||| || | || || ||||||||||| ||||| || | ||||| ||
Sbjct 796677 CAAGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTA 796618
Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAG--ACCCG 156395
|| | || | ||||| | |||||||||| || || | ||| | | ||||
Sbjct 796617 AAGAATTTGCTGGACATCAGGTTGTATGTCTCC--AAGACTCGCTCGATATCGTCACCCC 796560
Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455
| |||| | ||| || | ||| |||||||||||| ||||| |||||| || |||
Sbjct 796559 AG-ATACCAACAGACACACGCATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCA 796501
Query 156456 ATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| || ||||| | || |||| ||| || || || || ||
Sbjct 796500 ATCTTGAGGAGGTAGGATCGCTCCAAAGTCTTGAAGCCAAAGTA 796457
>seq1030
Length=250146
Score = 149 bits (164), Expect = 2e-30
Identities = 247/354 (70%), Gaps = 2/354 (1%)
Strand=Plus/Plus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| || ||| ||| || || | ||||| |||||| || |||||||| || |
Sbjct 123564 CCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCATTCCGAGACCT 123623
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424
| || ||| ||||| || |||||||| || ||| |||| | | || |||||||
Sbjct 123624 ACTCCCTTCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTCAACG 123683
Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483
||||| | || ||||||| || |||||| | |||||||| || ||||||||||
Sbjct 123684 CCATT-GAGACCATTCCTTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAG 123742
Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543
|| ||| | ||||| ||||||||||| || |||| || ||||| || ||
Sbjct 123743 GATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTC 123802
Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603
||||| ||||| || |||||| || ||||| || ||||||||| | | || || |||
Sbjct 123803 TTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTG 123862
Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
|| || ||||| || || || | || |||| || ||||| || ||||||
Sbjct 123863 ACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACTGACTTTGCC 123916
>seq172
Length=326080
Score = 105 bits (116), Expect = 2e-17
Identities = 388/596 (65%), Gaps = 30/596 (5%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | ||| || ||||| | | ||||||| || | ||| | || ||
Sbjct 261670 ATGAGTCCACAGATCTCACAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 261611
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || |||||||| | ||||||||||||||| |||||||| |||||
Sbjct 261610 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAT 261551
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584
|| ||||||||||| ||||| | ||| ||| |||| || | || | ||| | | | |
Sbjct 261550 CGGAGACCACCATCACGAGCACGACCTTCGACAGGTTGTCTGGTCATGATCTGA--ACTG 261493
Query 251585 GACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644
||||| | || || ||| || | ||||| || |||||||||||| | |
Sbjct 261492 GACCGCGAGCACGAGCGTGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAGTAGG 261433
Query 251645 CGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATA 251700
|| |||| ||| | || |||| || || | |||||| || | || |||||
Sbjct 261432 TAGGTCCGAAGAACACCTGAGCACGAA-GCTTTCG---TCCAGTGTGACCATTGTACATG 261377
Query 251701 ACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC-CAAT 251759
|| ||| || ||||| ||||| ||||| ||| |||| | || |||
Sbjct 261376 ACCTCGAAACCTCGAGATTGGTAACCGTGTTTC-----CTCAGAAGTTCTGAGACTGAAT 261322
Query 251760 CTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCAACAC 251813
| || | || | | || || |||| || | | ||| | | | ||
Sbjct 261321 C--GACTGTGACATCAGTGAACGGTGTAGCGTCACCCTCCATACCTTCCAGCGTTGAAAC 261264
Query 251814 TTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGG 251873
|||| | ||| ||| ||| ||||| || ||||| || ||||| || || ||
Sbjct 261263 CTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGACGGAATGGCGTGAGG 261204
Query 251874 ATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAAT 251933
||||| ||||| ||||| | || || || |||| |||||||||| | || ||
Sbjct 261203 GTTGATAATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GTCGAT 261145
Query 251934 AATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||| || || || |||||||| ||||| |||||| ||||| ||||||||
Sbjct 261144 -ATGTAACACCGATTGTACCCTTTTGACCGTGGCGAGAAGCAAACTTGTCACCAAT 261090
>seq678
Length=783410
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || ||||| | || ||||| |||||||| |||||||||
Sbjct 336099 AGAATTTCCTTGAGACGTGGTACACCGAGTGTAACGTT---CTTGGACGACACACCAGCA 336155
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || || || || | ||||||| |||||||| ||| ||||| || |
Sbjct 336156 AAATGGAAGGTGTTTAGTGTCATCTGAGTAGCAGGCTCACCGATAGACTGTGCAGCCAGA 336215
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 336216 ACACCAACCATTTCACCAGG 336235
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 251848 GTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCA 251907
||||| ||| ||| | | | ||||| || ||||| || ||||| ||| |||| ||
Sbjct 596565 GTCATTCGAGAGGGGAAACCGTGGGGGTTCATGATAATATCGGGGCTCAATCCACTGTCA 596624
Query 251908 GTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGTGACGA 251967
| |||||||| ||||| || ||||| ||| | |||| |||||||| |||||||||
Sbjct 596625 GAGAAGGGCAAATCCTCTTGCTCAACAATAATACCAACGACACCCTTTTGACCGTGACGA 596684
Query 251968 GAACTGAACTTATCACC 251984
|| |||||| |||||
Sbjct 596685 GACGAGAACTTGTCACC 596701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471786843151647
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