Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq822 212 2e-49 seq1030 149 2e-30 seq172 105 2e-17 seq678 89.7 2e-12 >seq822 Length=1165972 Score = 212 bits (234), Expect = 2e-49 Identities = 586/884 (66%), Gaps = 27/884 (3%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || || | ||| ||| ||||||||||||||| ||||||||| | ||||| ||||| Sbjct 797328 TACTCAATAATTTCAGTGCACAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTG 797269 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || | |||||| ||||||||||| || ||| | ||| |||| ||||| |||| || Sbjct 797268 CTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCC 797209 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || ||||| ||| || | | || || || |||| |||| ||| | Sbjct 797208 TCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTC 797149 Query 155811 TCATATTT--CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 || ||||| | || | ||| | | | ||||||||||| || || || ||||||| Sbjct 797148 TCGTATTTTTCGTAAAGAGCCTC--GAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGC 797091 Query 155869 ACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATA 155925 ||| | |||||| | ||| | ||| | || || | | |||||| |||||| | Sbjct 797090 ACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATAAAAA 797034 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 |||| ||||| || ||| ||||| | || |||||| | ||||| | Sbjct 797033 GATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGT 796974 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | |||||| | ||||| || ||||| || || || |||| Sbjct 796973 TCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 796914 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| | |||| ||||||||||| ||||| |||||||| || |||||||||| Sbjct 796913 AAGCACCGGGTCGCTTGTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACAC 796854 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| || || ||||| || || ||||| ||| || | || |||| | Sbjct 796853 GAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAG 796794 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 |||| | || | | || |||||||| || | |||| || || || || || Sbjct 796793 CACGAATACGGTGCACGTTCAGACCAATACCTCCAG-CCATCTTGGAGATCATGGCACAG 796735 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAG---TAGATAG 156278 ||| | ||||| | | || || |||||| || || | ||| || | ||| || Sbjct 796734 GTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCAT--ATCGACCAAGA-AG 796678 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 || || ||||| || | || || ||||||||||| ||||| || | ||||| || Sbjct 796677 CAAGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTA 796618 Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAG--ACCCG 156395 || | || | ||||| | |||||||||| || || | ||| | | |||| Sbjct 796617 AAGAATTTGCTGGACATCAGGTTGTATGTCTCC--AAGACTCGCTCGATATCGTCACCCC 796560 Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455 | |||| | ||| || | ||| |||||||||||| ||||| |||||| || ||| Sbjct 796559 AG-ATACCAACAGACACACGCATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCA 796501 Query 156456 ATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || || ||||| | || |||| ||| || || || || || Sbjct 796500 ATCTTGAGGAGGTAGGATCGCTCCAAAGTCTTGAAGCCAAAGTA 796457 >seq1030 Length=250146 Score = 149 bits (164), Expect = 2e-30 Identities = 247/354 (70%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || ||| ||| || || | ||||| |||||| || |||||||| || | Sbjct 123564 CCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCATTCCGAGACCT 123623 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | || ||| ||||| || |||||||| || ||| |||| | | || ||||||| Sbjct 123624 ACTCCCTTCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTCAACG 123683 Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | || ||||||| || |||||| | |||||||| || |||||||||| Sbjct 123684 CCATT-GAGACCATTCCTTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAG 123742 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 || ||| | ||||| ||||||||||| || |||| || ||||| || || Sbjct 123743 GATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTC 123802 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||||| ||||| || |||||| || ||||| || ||||||||| | | || || ||| Sbjct 123803 TTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTG 123862 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || || ||||| || || || | || |||| || ||||| || |||||| Sbjct 123863 ACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACTGACTTTGCC 123916 >seq172 Length=326080 Score = 105 bits (116), Expect = 2e-17 Identities = 388/596 (65%), Gaps = 30/596 (5%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||| || ||||| | | ||||||| || | ||| | || || Sbjct 261670 ATGAGTCCACAGATCTCACAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 261611 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| |||||||| ||||| Sbjct 261610 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAT 261551 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584 || ||||||||||| ||||| | ||| ||| |||| || | || | ||| | | | | Sbjct 261550 CGGAGACCACCATCACGAGCACGACCTTCGACAGGTTGTCTGGTCATGATCTGA--ACTG 261493 Query 251585 GACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644 ||||| | || || ||| || | ||||| || |||||||||||| | | Sbjct 261492 GACCGCGAGCACGAGCGTGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAGTAGG 261433 Query 251645 CGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATA 251700 || |||| ||| | || |||| || || | |||||| || | || ||||| Sbjct 261432 TAGGTCCGAAGAACACCTGAGCACGAA-GCTTTCG---TCCAGTGTGACCATTGTACATG 261377 Query 251701 ACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC-CAAT 251759 || ||| || ||||| ||||| ||||| ||| |||| | || ||| Sbjct 261376 ACCTCGAAACCTCGAGATTGGTAACCGTGTTTC-----CTCAGAAGTTCTGAGACTGAAT 261322 Query 251760 CTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCAACAC 251813 | || | || | | || || |||| || | | ||| | | | || Sbjct 261321 C--GACTGTGACATCAGTGAACGGTGTAGCGTCACCCTCCATACCTTCCAGCGTTGAAAC 261264 Query 251814 TTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGG 251873 |||| | ||| ||| ||| ||||| || ||||| || ||||| || || || Sbjct 261263 CTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGACGGAATGGCGTGAGG 261204 Query 251874 ATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAAT 251933 ||||| ||||| ||||| | || || || |||| |||||||||| | || || Sbjct 261203 GTTGATAATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GTCGAT 261145 Query 251934 AATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||| || || || |||||||| ||||| |||||| ||||| |||||||| Sbjct 261144 -ATGTAACACCGATTGTACCCTTTTGACCGTGGCGAGAAGCAAACTTGTCACCAAT 261090 >seq678 Length=783410 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| | || ||||| |||||||| ||||||||| Sbjct 336099 AGAATTTCCTTGAGACGTGGTACACCGAGTGTAACGTT---CTTGGACGACACACCAGCA 336155 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || || || || | ||||||| |||||||| ||| ||||| || | Sbjct 336156 AAATGGAAGGTGTTTAGTGTCATCTGAGTAGCAGGCTCACCGATAGACTGTGCAGCCAGA 336215 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 336216 ACACCAACCATTTCACCAGG 336235 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 251848 GTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCA 251907 ||||| ||| ||| | | | ||||| || ||||| || ||||| ||| |||| || Sbjct 596565 GTCATTCGAGAGGGGAAACCGTGGGGGTTCATGATAATATCGGGGCTCAATCCACTGTCA 596624 Query 251908 GTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGTGACGA 251967 | |||||||| ||||| || ||||| ||| | |||| |||||||| ||||||||| Sbjct 596625 GAGAAGGGCAAATCCTCTTGCTCAACAATAATACCAACGACACCCTTTTGACCGTGACGA 596684 Query 251968 GAACTGAACTTATCACC 251984 || |||||| ||||| Sbjct 596685 GACGAGAACTTGTCACC 596701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471786843151647