Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq822 127 2e-23 seq1537 123 3e-22 seq1030 122 1e-21 >seq822 Length=1165972 Score = 127 bits (140), Expect = 2e-23 Identities = 183/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||| ||||| || |||| ||| ||||| || ||||| || || | ||||||||| Sbjct 796888 CTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTTGGA 796829 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||||| ||| | || || | |||| || | || Sbjct 796828 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCACGTTCAGACC 796769 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| ||||||||| | || || ||||| || |||||||||||||| Sbjct 796768 AATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTC 796709 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || |||| ||||||| || || | ||||| || || ||| || || | || || Sbjct 796708 AATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTACC 796649 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||||||||||| ||||| Sbjct 796648 AGCGTTGAAGAGTGTGGG 796631 >seq1537 Length=2452528 Score = 123 bits (136), Expect = 3e-22 Identities = 94/111 (85%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| |||||||||||||| || ||| | || |||||| |||| || ||||||| Sbjct 788486 CCAACTACCTTGACATCAAGCCTCTCCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 788427 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| ||||||||||| || || ||||| | | ||| Sbjct 788426 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATTACGAACG 788376 >seq1030 Length=250146 Score = 122 bits (134), Expect = 1e-21 Identities = 205/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| |||||||||||||| || ||||| Sbjct 123898 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTT 123839 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| ||||| | | | || || ||| ||| ||||| ||||| || || || Sbjct 123838 CTTGAGCCAGAAGATAGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCG 123781 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCC 869356 ||| | | ||| |||| |||||||| | || | ||| | | |||||| || ||| Sbjct 123780 AAGGCAACGAGACGCTGGGCAAAGGAG--GA-GTCCTTATCCTGGATCCATCGGATGGCC 123724 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 869415 ||||||||||| || | | | || | || || |||||| ||||||| ||| | Sbjct 123723 CAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC-G 123665 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || ||||||| |||||||| || || || || |||||||| Sbjct 123664 CTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTC 123617 Score = 95.1 bits (104), Expect = 1e-13 Identities = 174/252 (69%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| | || ||||| Sbjct 124212 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 124153 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | || |||||| | ||||||| ||| ||| || |||||| Sbjct 124152 TTCTCCATGAAGTCAAAGGGGTTGCTAGCCTTGTAGACCTTCTCGTTGCCAAGAGCGA-- 124095 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 |||| || || |||||||| ||||| || ||||| ||||||| | | |||||||||| Sbjct 124094 CGAGGAGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTCATGCCGA 124035 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | ||| | | ||||| | ||| || |||||| || || Sbjct 124034 GAAGGGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGA 123975 Query 868929 TGATCTGCCTGG 868940 |||| | ||||| Sbjct 123974 TGATGT-CCTGG 123964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107005352502027