Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1030 156 7e-32 seq822 127 3e-23 seq1537 111 2e-18 >seq1030 Length=250146 Score = 156 bits (172), Expect = 7e-32 Identities = 236/331 (71%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| |||||||||||||| || ||||| Sbjct 123898 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTT 123839 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||| |||| || || || ||| ||||| ||||| || || || Sbjct 123838 CTTGAGCCAGAAGATAGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCAACAGCAGC 123782 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | ||||| |||| |||||| | | | ||| | | |||||| || || Sbjct 123781 GAAGGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGC 123725 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575 ||| || ||||| || | | | || | || || |||||| ||||||| ||| | Sbjct 123724 CCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTCG 123665 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | | || ||||||| ||||||||| ||||| || ||||||||||| || ||||||| Sbjct 123664 -CTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAATGGATGT 123606 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || |||||||||||| || ||||| Sbjct 123605 TCTCCATCATGATCTGGAAGCCGTAGAAGCA 123575 Score = 107 bits (118), Expect = 3e-17 Identities = 181/259 (70%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 124219 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 124160 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009 ||||| |||||| | || |||||| | | |||| ||||||| || | Sbjct 124159 GGAGATGTTCTCCATGAAGTCAAAGGGGTTGCTAGCCTTGTAGACCTTCTCGTTGCCAAG 124100 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||||| || || || ||||||||||| ||||| ||||| ||||||| | | ||| Sbjct 124099 AGCGACG--AGGAGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTC 124042 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| || || ||| || | ||| ||| ||||| | ||| || |||||| Sbjct 124041 ATGCCGAGAAGGGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCA 123982 Query 794130 TCGATGATGATCTGCCTGG 794148 || ||||||| | ||||| Sbjct 123981 TCAGTGATGATGT-CCTGG 123964 >seq822 Length=1165972 Score = 127 bits (140), Expect = 3e-23 Identities = 183/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||||||||| || |||| ||| ||||| || ||||| || |||| ||||||||| Sbjct 796888 CTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTTGGA 796829 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| ||| | || || | |||| || | || Sbjct 796828 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACGGTGCACGTTCAGACC 796769 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||||||||| Sbjct 796768 AATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTC 796709 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | || || Sbjct 796708 AATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTACC 796649 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || |||||||| ||||| Sbjct 796648 AGCGTTGAAGAGTGTGGG 796631 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 8968 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 8909 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||||||||| |||| Sbjct 8908 GATGAGGCGGACAGAGGTCTGGATCTCTCGGG 8877 >seq1537 Length=2452528 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||| ||||| ||| | || |||||||| || || ||| | | Sbjct 788486 CCAACTACCTTGACATCAAGCCTCTCCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 788427 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| ||||| || |||||||| || || ||||| | | ||| Sbjct 788426 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATTACGAACG 788376 Score = 86.0 bits (94), Expect = 1e-10 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 || ||||| || | | ||||||||||| |||||| || | || |||| || ||||| Sbjct 1850350 GGGCGCCATAAACTTGTTATCCTCGATGAAGCCGACAGCATGACTTCGGGTGCTCAGCAA 1850291 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 ||||| || || ||||| | ||| | ||||| || || ||||| | ||||||||| Sbjct 1850290 GCCCTTAGACGAACTATGGAGATCTACTCTAACACTACACGATTTGCTTTCGCCTGCAAC 1850231 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383 ||| | | | |||||| ||||||| || ||||||||| | || | || Sbjct 1850230 CAGTCCAACAAGATTATCGAACCCCTCCAATCACGATGCGCCATCCTACGATACGCCAAG 1850171 Query 2019384 CTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 | || |||||||| ||| ||| || | ||||| || || ||||||||| Sbjct 1850170 TTAACGGACGCCCAAGTCGTAAAGCGACTCATGCAAATTATTGAGGCGGAAAAGGTC 1850114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916072903091009