Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq486 107 1e-18
>seq486
Length=637844
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || || | |||||| || ||||| || |||||||| || || || | ||| ||
Sbjct 83043 CGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCG 83102
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || ||||| ||||||||| | |||| | |||||||| || || |||||||| |||
Sbjct 83103 TCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTG 83162
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| |||||| | || | || || || || || || ||||| |||
Sbjct 83163 TCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGAGTGATA 83222
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATAT 29780
||||||||||| | || || || | |||
Sbjct 83223 GTTTTGCCAGTGAGTGTCTTGACGACTAT 83251
Score = 96.9 bits (106), Expect = 3e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || || ||||| || || ||||| || || | || || ||
Sbjct 82814 ACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCC 82873
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || ||||| |||||||| | || | || || ||||| || ||||||||||| ||
Sbjct 82874 GTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTT 82933
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | || ||| | || | || || || || ||||| ||||| |
Sbjct 82934 GTCTTG-AATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAA 82992
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || ||||| | ||| || || || || |||||
Sbjct 82993 TGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 83029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385211542684971
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |