Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq822 260 1e-64 seq1496 140 3e-28 seq486 107 2e-18 seq1030 102 8e-17 seq1259 98.7 1e-15 >seq822 Length=1165972 Score = 260 bits (288), Expect = 1e-64 Identities = 1122/1751 (64%), Gaps = 51/1751 (3%) Strand=Plus/Minus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA---GTCGCTTT 148109 |||||| |||||||||||| || || |||||||||||||| | || || | |||| Sbjct 798147 GACTGGGACTGGTCAATGAAGGCACCTCGGTCAGCGGCCATCTGAACGACCTGGCGCTGA 798088 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 |||||||| | ||||| ||||| ||||| || | | || ||| | ||| Sbjct 798087 GAA---ATCTCCCAAACAGTCTTATACAGAGCCTTGACATCAGCAGGGATGTTGGGAATG 798031 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||| | || || | |||| || | || ||| | || | | || Sbjct 798030 TTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCC 797971 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | |||| ||||| | || || | | || || ||||| ||||| || ||||| || Sbjct 797970 ATGTCGACAAGGTCCTTGAGCAACCAGGGGTTGACAACCTGGAACTCACCAGCGAGGACA 797911 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || ||| | || | |||| || | || || || ||||||||||||||| |||||| Sbjct 797910 CGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGA 797851 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | ||| | || || ||||| || | ||||| ||| || | |||| | | | || Sbjct 797850 GAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATACCGTG-TGTCTT 797792 Query 148410 ATTTTGCGCT-TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468 || | || |||| | ||||||||||||| || || | |||||||||||||| Sbjct 797791 GACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATGTC 797732 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 | |||| || || || ||||| ||||| | | | | ||| || || | | | Sbjct 797731 GAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTC 797672 Query 148529 CGCCGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCC 148587 | ||||| | ||| | || ||| || ||| ||| || |||||| || ||| Sbjct 797671 CTTGGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCT 797613 Query 148588 TGTTGAGC---AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644 |||||||| | ||| || | | ||| | ||||| ||||| | || || | Sbjct 797612 TGTTGAGCTCACGAGCC-TCGGGTGAC--TCGAAGGGCATGCGCAGAGCAAGGAAAGCAT 797556 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 | ||||||||||| || || | |||||||| ||||| |||||| | ||| || Sbjct 797555 CAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAGCCT 797496 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG 148764 | || || |||||||| |||||||||||||| || ||||| | || |||| Sbjct 797495 CCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAGGTTGCGAATAACAACCTGAC 797436 Query 148765 TAATTCTGCGCAGCAATTCAAAATCGTACTTG---TCATC-TA--CGATGCATCGGTTCA 148818 | | | ||| | | || ||||| | ||||| || |||| | || Sbjct 797435 TGACCTCGTGCAACTTCTTGAAGTCGTAGCAGGCCTCATCGTAGTTGATGAAGGAAGGCA 797376 Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCT 148878 || | |||||| || ||||| || || ||| || ||||| | ||||| | || | Sbjct 797375 GAGCTAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAATTT 797316 Query 148879 CGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGC 148938 | | |||||| || | | ||| ||| | ||||||||| |||||||||| ||| | Sbjct 797315 CAGTGCACAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTAC 797256 Query 148939 ACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---A 148995 | || |||||||| |||||| | || ||||| || ||| | || | ||| Sbjct 797255 AGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCAT 797196 Query 148996 ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA------CCCTCCTGCTCGT 149049 ||| | || | ||| || |||| | || | |||| ||||||| ||||| Sbjct 797195 ACCAA---AGCTTCTGAGC-----CTTGATAGTC-TTGCGACCCTTGCCCTCCTTCTCGT 797145 Query 149050 A--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT 149107 | | ||| | ||| ||||||| |||| |||||||| ||| |||| || ||||||| Sbjct 797144 ATTTTTCGTAAAGAGC--CTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTC 797087 Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167 || |||||||| || | ||| | |||| | | || ||||||||||| ||||| || Sbjct 797086 GTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGG 797027 Query 149168 CACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCG 149227 | ||| || ||| | ||||| || || | || || || ||| || Sbjct 797026 GATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCG 796967 Query 149228 CAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC 149287 || | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 796966 GAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACC 796907 Query 149288 CTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCAT 149344 ||| ||||| ||||| ||||| | ||| | ||||||| || || |||| ||| Sbjct 796906 GGGTCGCTTGTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCAT 796847 Query 149345 AGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCAC 149404 ||| ||| ||| ||| || ||||| ||| | ||| ||| || || | Sbjct 796846 AGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAAT 796787 Query 149405 TTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGA 149463 ||||||||| | || || || || ||| | ||| ||||| || ||| || Sbjct 796786 ACGGTGCACGTTCAGACCAATACCTCCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGA 796728 Query 149464 GCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACA 149523 | || |||||||||||| || |||||| |||||| | || ||||| || ||| Sbjct 796727 GAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACA 796668 Query 149524 TTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-C 149582 ||| || | | || || || ||| | ||||| ||| |||||||| |||| | Sbjct 796667 ATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGC 796608 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 ||| ||||| | ||| | ||| | || || || || || || || ||| || | Sbjct 796607 TGG-ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAGATACCAACA 796549 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAG 149702 | || ||||| | ||||||||| || ||||| | | || |||| ||||| | | Sbjct 796548 GACACACGCATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAATCTTGAGGAGG 796489 Query 149703 TAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCA 149762 ||| || | |||||| |||||||||| | ||| | || |||||| | | | || Sbjct 796488 TAGGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACA 796429 Query 149763 ATGGCGGCGTC 149773 ||||||| ||| Sbjct 796428 ATGGCGGAGTC 796418 >seq1496 Length=1355525 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 510705 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGC 510647 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| || |||||||| |||||||| |||||| || Sbjct 510646 CAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 510587 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 510586 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 510527 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 510526 TCTTGACGAAAATCTGCAT 510508 >seq486 Length=637844 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || |||||||| || Sbjct 82605 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA-TCTTCCAGCTGCTTACC 82663 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||| || || ||||| || |||||||| ||||| ||| Sbjct 82664 AGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTT 82723 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| ||| ||| || || | ||||| || || ||||| ||||| Sbjct 82724 CACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTTCCGGTGAGAGT 82783 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 82784 CTTGACGAAAATCTGCAT 82801 >seq1030 Length=250146 Score = 102 bits (112), Expect = 8e-17 Identities = 337/519 (65%), Gaps = 9/519 (2%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||| | || || ||||| || ||||| || ||||| | | || ||||| | Sbjct 124207 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 124148 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || || || |||||||| || || || ||| | ||| | ||||| || Sbjct 124147 CATGAAGTCAAAGGGGTTGCTAGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACGAGGAG 124088 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 || || || || |||||||| |||| |||| | | |||||||| || || | Sbjct 124087 ACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAG-AAGGG 124029 Query 120531 CACCGGCAAC-GCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 ||| || | ||| |||| ||||||| ||||||| || || || ||| ||| Sbjct 124028 CACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGT 123969 Query 120590 CGAGCATAGTGTGGCCG--GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGC 120647 | | || | || | |||| | | || | || | || | |||| || Sbjct 123968 CCTGGATCATCTGCTTGCTGGCACGACCCTTAAGGTGAGAGT---GGAGGA--GGCAGGC 123914 Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707 |||||| ||||| || ||||| || || || || ||||||||| || ||||||||||| Sbjct 123913 AAAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGG 123854 Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767 ||||| || | |||||| |||| || | ||||||| || ||||| | || Sbjct 123853 CATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACC 123794 Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCA 120827 ||| || || ||||| || | |||| ||| || | | ||| | |||||| Sbjct 123793 CTCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCA 123734 Query 120828 CTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 |||||||| |||||||| || || | ||| || || Sbjct 123733 TCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAAGGAAT 123695 >seq1259 Length=620669 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||||||||| || ||| | || || ||||| ||||| || || ||||| |||||| Sbjct 152397 TCTTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 152456 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 152457 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 152516 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 152517 GTCTTGCCCGTCAGGGTCTTCACGAAA 152543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410944258440