Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq822 111 4e-19
seq523 87.8 4e-12
>seq822
Length=1165972
Score = 111 bits (122), Expect = 4e-19
Identities = 373/574 (65%), Gaps = 9/574 (2%)
Strand=Plus/Plus
Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570
|||||| | |||||||| | | | || || || || |||||| || || || |||
Sbjct 796664 CAATTGTCATCTTGCTTCTTGGTCGATATGAAGGACGACAGTATTGAGGGCATCTACGAT 796723
Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630
|||| || ||| | || || || | ||||||| |||||| | |||| ||
Sbjct 796724 ACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGAGGTATTGGTCTGAACGTGCAC 796783
Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690
|||||| | | || | | ||||| | || ||| | || | || |||||
Sbjct 796784 CGTATTCGTGCTACTGGCTCCTACATCGCCGGTACCAACGGTACATCCAACGGCGTTGTT 796843
Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GA 110747
|| ||| | | ||||||||| ||||||| ||||| |||| ||||| || | ||
Sbjct 796844 CCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATGTCGATCAGGGTGGCAACAAGCGA 796903
Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807
|| | ||||| ||||| ||||| |||||||| || ||| | || |||||| | ||
Sbjct 796904 CCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGTCTTCGAATTCCTTGAT 796963
Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867
|| || || || || || || || | || ||||| | || || | |||
Sbjct 796964 CTCCGAAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGACCTGTTCCTCGCCCTTTGG 797023
Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCT 110927
|| | ||| | || ||||| |||||| || | || || ||| | || ||||| ||
Sbjct 797024 ATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACGGTGACTGGACACTGATGTGCCC- 797082
Query 110928 CATCGT-TCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986
|| || | ||||| || | || || || | ||||| || | |||||||||||
Sbjct 797083 CAACGAGTGCCCTGGCCTCGCCGACTGCTACGGTGAGGAGTTCGAGGCTCTTTACGAAAA 797142
Query 110987 ATATGAAAAAGAAGGCAAGTTTCGCAA-ACAAATTCCA-GCTCAAGAACTTTGGTTCAAA 111044
||| || || || |||||| |||||| || | || | ||||| | |||||||
Sbjct 797143 ATACGAGAAGGAGGGCAAGGGTCGCAAGACTA--TCAAGGCTCAGAAGCTTTGGTATGCC 797200
Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078
|| ||||| | || ||| ||||||| ||||
Sbjct 797201 ATTCTTGAGGCTCAGACTGAGACTGGAAACCCTT 797234
>seq523
Length=179213
Score = 87.8 bits (96), Expect = 4e-12
Identities = 180/265 (68%), Gaps = 2/265 (1%)
Strand=Plus/Minus
Query 279870 TAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAAT 279929
|| ||||||| || || ||| ||||||||| | |||| || ||||| ||||| |
Sbjct 138946 TACTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAACT 138887
Query 279930 TGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATC 279989
|||| || || | || | | | || || |||||||| || ||||| | | || |
Sbjct 138886 TGGTCAAAGACAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCCGAACAGACTGCCTACC 138827
Query 279990 ATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTT 280049
||||||||||| |||||| || |||| | || || ||||| |||| | | ||
Sbjct 138826 ATCACGGTGAACAGTCTCTCCAGCAGACTATCATTGGCCTAGCCCAGAATTTCGTCGGTT 138767
Query 280050 CAAACAACTTAAATCTG-CTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGA 280108
|||||||| | || ||| || ||| | ||| | || |||||||| || | ||||
Sbjct 138766 CAAACAACATCAA-CTGTCTAGAACCCAGTGGAAACTTCGGTTCTCGACTTGCCGGTGGA 138708
Query 280109 AAAGATCATGGTAGTGCTCGTTACA 280133
||| || ||| |||||||||
Sbjct 138707 TCTGATGCTGCCAGTCCTCGTTACA 138683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186787998950391
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |