Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq822 111 4e-19 seq523 87.8 4e-12 >seq822 Length=1165972 Score = 111 bits (122), Expect = 4e-19 Identities = 373/574 (65%), Gaps = 9/574 (2%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 |||||| | |||||||| | | | || || || || |||||| || || || ||| Sbjct 796664 CAATTGTCATCTTGCTTCTTGGTCGATATGAAGGACGACAGTATTGAGGGCATCTACGAT 796723 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 |||| || ||| | || || || | ||||||| |||||| | |||| || Sbjct 796724 ACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGAGGTATTGGTCTGAACGTGCAC 796783 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 |||||| | | || | | ||||| | || ||| | || | || ||||| Sbjct 796784 CGTATTCGTGCTACTGGCTCCTACATCGCCGGTACCAACGGTACATCCAACGGCGTTGTT 796843 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GA 110747 || ||| | | ||||||||| ||||||| ||||| |||| ||||| || | || Sbjct 796844 CCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATGTCGATCAGGGTGGCAACAAGCGA 796903 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 || | ||||| ||||| ||||| |||||||| || ||| | || |||||| | || Sbjct 796904 CCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGTCTTCGAATTCCTTGAT 796963 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 || || || || || || || || | || ||||| | || || | ||| Sbjct 796964 CTCCGAAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGACCTGTTCCTCGCCCTTTGG 797023 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCT 110927 || | ||| | || ||||| |||||| || | || || ||| | || ||||| || Sbjct 797024 ATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACGGTGACTGGACACTGATGTGCCC- 797082 Query 110928 CATCGT-TCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986 || || | ||||| || | || || || | ||||| || | ||||||||||| Sbjct 797083 CAACGAGTGCCCTGGCCTCGCCGACTGCTACGGTGAGGAGTTCGAGGCTCTTTACGAAAA 797142 Query 110987 ATATGAAAAAGAAGGCAAGTTTCGCAA-ACAAATTCCA-GCTCAAGAACTTTGGTTCAAA 111044 ||| || || || |||||| |||||| || | || | ||||| | ||||||| Sbjct 797143 ATACGAGAAGGAGGGCAAGGGTCGCAAGACTA--TCAAGGCTCAGAAGCTTTGGTATGCC 797200 Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 || ||||| | || ||| ||||||| |||| Sbjct 797201 ATTCTTGAGGCTCAGACTGAGACTGGAAACCCTT 797234 >seq523 Length=179213 Score = 87.8 bits (96), Expect = 4e-12 Identities = 180/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 279870 TAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAAT 279929 || ||||||| || || ||| ||||||||| | |||| || ||||| ||||| | Sbjct 138946 TACTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAACT 138887 Query 279930 TGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATC 279989 |||| || || | || | | | || || |||||||| || ||||| | | || | Sbjct 138886 TGGTCAAAGACAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCCGAACAGACTGCCTACC 138827 Query 279990 ATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTT 280049 ||||||||||| |||||| || |||| | || || ||||| |||| | | || Sbjct 138826 ATCACGGTGAACAGTCTCTCCAGCAGACTATCATTGGCCTAGCCCAGAATTTCGTCGGTT 138767 Query 280050 CAAACAACTTAAATCTG-CTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGA 280108 |||||||| | || ||| || ||| | ||| | || |||||||| || | |||| Sbjct 138766 CAAACAACATCAA-CTGTCTAGAACCCAGTGGAAACTTCGGTTCTCGACTTGCCGGTGGA 138708 Query 280109 AAAGATCATGGTAGTGCTCGTTACA 280133 ||| || ||| ||||||||| Sbjct 138707 TCTGATGCTGCCAGTCCTCGTTACA 138683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186787998950391