Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1030 190 3e-42
seq822 114 2e-19
>seq1030
Length=250146
Score = 190 bits (210), Expect = 3e-42
Identities = 359/512 (70%), Gaps = 22/512 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| ||||| ||||| ||||| ||||||||| | || |
Sbjct 123361 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATC 123419
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTG--TCGC-TGAGCGACGACGAGCGCCATTTC 1455887
|| | || |||| ||||| |||| ||| | ||| |||| |||
Sbjct 123420 TCTCCAAGGATCTCCACG----ACTGGAACAATCGCCTGACTGCCGATGAGCAGTTCTTC 123475
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
|| ||| |||| ||||| || ||| ||| ||||| || || ||||||||| |
Sbjct 123476 GTCTCTCACATCCTTGCCTTCTT-CGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGT 123534
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| || || | |||||||| | || ||||| |||| || ||||| ||||||||
Sbjct 123535 TGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGAT 123594
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || |||||||| || || |||||||| || || || ||||||||| |||||||
Sbjct 123595 CATGATGGAGAACATCCATTCCGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGA 123654
Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126
|| | | || | ||| ||||||| |||||| || || | || | | | || |
Sbjct 123655 GCCCGCCCAGC-GAACCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGA 123713
Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186
||||||||||||| || |||||| | | | || ||| | ||||||| |||| ||
Sbjct 123714 AGGCCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCT 123771
Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243
||| | ||| || || || ||||| ||||| ||| ||| || || | | | |||||
Sbjct 123772 CGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCTATCTTC 123829
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||||||||||| || ||||||||||| ||
Sbjct 123830 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCT 123861
>seq822
Length=1165972
Score = 114 bits (126), Expect = 2e-19
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984
||||| ||||| || || || || || | || || || || ||||| || | ||
Sbjct 796631 CCCACACTCTTCAACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTCGAT 796690
Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044
||||||| ||| || ||||||||||| || || |||||| || || | ||||||
Sbjct 796691 ATGAAGGACGACAGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 796750
Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104
||| ||| || || || ||| | || ||| | || || | ||| ||||| |
Sbjct 796751 AAGATGGCTGGAGGTATTGGTCTGAACGTGCACCGTATTCGTGCTACTGGCTCCTACATC 796810
Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164
|| || |||||||| ||||||||| |||| || |||||||| || || ||| ||||
Sbjct 796811 GCCGGTACCAACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 796870
Query 260165 GCGCGCTACGTCGACCAG 260182
|| ||||| ||||| |||
Sbjct 796871 GCTCGCTATGTCGATCAG 796888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177653887052222
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |