Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1030 190 3e-42 seq822 114 2e-19 >seq1030 Length=250146 Score = 190 bits (210), Expect = 3e-42 Identities = 359/512 (70%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| ||||||||| | || | Sbjct 123361 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATC 123419 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTG--TCGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| |||| ||| | ||| |||| ||| Sbjct 123420 TCTCCAAGGATCTCCACG----ACTGGAACAATCGCCTGACTGCCGATGAGCAGTTCTTC 123475 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||| ||||| || ||| ||| ||||| || || ||||||||| | Sbjct 123476 GTCTCTCACATCCTTGCCTTCTT-CGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGT 123534 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || || | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 123535 TGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGAT 123594 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || |||||||| || || |||||||| || || || ||||||||| ||||||| Sbjct 123595 CATGATGGAGAACATCCATTCCGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGA 123654 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || | | || | ||| ||||||| |||||| || || | || | | | || | Sbjct 123655 GCCCGCCCAGC-GAACCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGA 123713 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 ||||||||||||| || |||||| | | | || ||| | ||||||| |||| || Sbjct 123714 AGGCCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCT 123771 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243 ||| | ||| || || || ||||| ||||| ||| ||| || || | | | ||||| Sbjct 123772 CGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCTATCTTC 123829 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||| || ||||||||||| || Sbjct 123830 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCT 123861 >seq822 Length=1165972 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||| ||||| || || || || || | || || || || ||||| || | || Sbjct 796631 CCCACACTCTTCAACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTCGAT 796690 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||||||||| || || |||||| || || | |||||| Sbjct 796691 ATGAAGGACGACAGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 796750 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | || ||| | || || | ||| ||||| | Sbjct 796751 AAGATGGCTGGAGGTATTGGTCTGAACGTGCACCGTATTCGTGCTACTGGCTCCTACATC 796810 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| ||||||||| |||| || |||||||| || || ||| |||| Sbjct 796811 GCCGGTACCAACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 796870 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||| ||||| ||| Sbjct 796871 GCTCGCTATGTCGATCAG 796888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177653887052222