Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq486 149 6e-31 seq1496 125 7e-24 >seq486 Length=637844 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| ||||||||||| || Sbjct 83313 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAG 83372 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||||||||| || ||||||||||| ||||||||||| || Sbjct 83373 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGG 83432 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 83433 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACC 83492 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| || || || ||||| || ||||| Sbjct 83493 TCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 83539 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || |||||||| ||||||||||||||| | Sbjct 83031 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCG 83090 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || || ||||| ||||| |||| ||||||||||| || || Sbjct 83091 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGG 83150 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || ||| ||||| ||| | || ||||| || || || Sbjct 83151 ATACCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAACC 83210 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 |||||||| || ||||| || || | || || |||| Sbjct 83211 TCGAGAGTGATAGTTTTGCCAGTGAGTGTCTTGACGA 83247 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | |||||||| || || || ||||| || ||||||||||||| | |||| || Sbjct 82584 AGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGA 82643 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || || | ||| |||||||| || || || || || Sbjct 82644 CCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCC 82703 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | ||||| || || || || || || Sbjct 82704 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTG 82763 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||| || |||||||| ||||| Sbjct 82764 ATCGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 82801 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| || |||||||||||| || || | ||| || || || Sbjct 82826 GTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTG 82885 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || | ||||| |||||||| || || || || || |||||||| || Sbjct 82886 CTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTGAATCTT 82945 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || ||||| || || || || ||||||||||| || || || Sbjct 82946 GCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGT 83005 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 83006 GAGGGTCTTGACGAAGATTTGCAT 83029 >seq1496 Length=1355525 Score = 125 bits (138), Expect = 7e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | || || | ||| || | || ||||| || ||||| ||||| || ||||||||| Sbjct 510740 GCCATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 510681 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 |||| | |||| | || |||||||| ||||| ||||| || | |||||||| || Sbjct 510680 TCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCA 510621 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || ||||| || || || || || || ||||| ||| | |||||||| || Sbjct 510620 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGAC 510561 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || || || || || || | || || |||||||| ||||| ||| Sbjct 510560 TCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 510504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505388096190120