Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq486 105 6e-18
>seq486
Length=637844
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||||||| | |||| | ||||| ||||| |||||
Sbjct 82605 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTACCA 82664
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || ||||| || ||||| || || | |||||| || || |||||| | |||
Sbjct 82665 GCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTC 82724
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | |||||| ||| || || || || || || | || || || |||||
Sbjct 82725 ACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTTCCGGTGAGAGTC 82784
Query 27231 TTCACAAAGATTTGCATA 27248
|| || || || ||||||
Sbjct 82785 TTGACGAAAATCTGCATA 82802
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||||| || || || || ||||||||| | | || |||| ||
Sbjct 82821 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCA 82880
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || || || ||| | ||||| ||||||||||| || || | |||||| || ||
Sbjct 82881 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTGA 82940
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| | |||| | || | || || | | || ||||| ||||| || | ||
Sbjct 82941 ATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTT 83000
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || || || ||||||||||||
Sbjct 83001 CCAGTGAGGGTCTTGACGAAGATTTGCATA 83030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424925953233672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |