Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq822 262 5e-65 seq1030 147 3e-30 seq1070 82.4 1e-10 >seq822 Length=1165972 Score = 262 bits (290), Expect = 5e-65 Identities = 1155/1792 (64%), Gaps = 61/1792 (3%) Strand=Plus/Minus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| |||||| Sbjct 798285 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTGCGAAGGTAGTACATGCCGGTC 798226 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || ||||||| || | || | |||||| | || |||| |||||| || Sbjct 798225 TTGAGACCAAGTTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTAGGGTC 798167 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| ||||||||||| || || | || ||| Sbjct 798166 CTTCATGTGGATGTTCAGTGACTGGGACT--GGTCAATGAAGGCACCTCGGTCAGCGGCC 798109 Query 110501 ATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560 || | || ||| | | ||| |||||||| || ||| ||| ||||| |||| Sbjct 798108 ATCTGAACGACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGCCTTGACATCA 798049 Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATA 110620 | ||||| | | || ||||| |||||||| | | | ||| | | ||||||| Sbjct 798048 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATA 797989 Query 110621 TCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGA----CGAGGTGCTTGTTGACAAT 110676 | | |||||| ||||| || | ||||| |||| | ||| | ||||||| Sbjct 797988 GCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCAGGGG----TTGACAAC 797933 Query 110677 GACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCA 110736 |||||||| |||||| | || | |||||||||| | ||||| || || ||||| Sbjct 797932 CTGGAACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCA 797873 Query 110737 TTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACT 110796 || || || |||| || || | ||| ||| || ||||| || || | | ||||| Sbjct 797872 CTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACT 797813 Query 110797 GTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG-- 110851 |||||| | ||| | ||||| ||||| ||| | |||||||| || | Sbjct 797812 GTTACGGATACCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTC 797756 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCC 110911 || || || || |||| ||||||| ||||| || | || | || |||||||| ||| Sbjct 797755 AGAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCC 797698 Query 110912 TCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGC 110970 | ||||| |||| ||| | | | |||| | ||| | || |||| || Sbjct 797697 TTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACGGAG-GCAGTGAGGGCAGC 797639 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || ||||| || ||||| | || | ||| || || ||| || || | Sbjct 797638 GTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGG 797579 Query 111031 GTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || |||| || || || |||||||| | |||||| |||| || Sbjct 797578 CATGCG-CAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGT 797520 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||||| || || | ||| || ||| || || || || ||| |||| Sbjct 797519 GGCGCATGTTG--CTGTTGCG-AGCCTCCGGGACAGGGTAGTGGTTCACGTCGATGATCT 797463 Query 111147 GGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTG 111205 ||| || || |||||| || ||| || || || || || | | || | | Sbjct 797462 TGTTCAGGTTGCGAATAACAACCTGACTGACCTCGTGCAACTTCTTGA-AGTCGTA---G 797407 Query 111206 CGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 111262 | | ||| || | ||| | || || || | || || | ||||| ||||| Sbjct 797406 CAGGCCTCATCGTAGTTGATGAAGGAAGGCAGAGCTAGAGAGGCAAGGTTGCAGACAGCG 797347 Query 111263 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTC 111322 ||| || | ||||| | |||||| || || | ||| ||||| || || Sbjct 797346 ACCTCGTCAGGGGCACAATACTCAATAATTTCAGTGCACAGGTTAGAACTTCGGATGGTG 797287 Query 111323 CCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 111382 || | ||||||||||| ||||| ||| || |||||||||||||||||| | || | Sbjct 797286 CCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTT 797227 Query 111383 CCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGG 111440 || ||||| ||||| | | ||||| || | ||||| | || | | | || || | | Sbjct 797226 CCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTG 797167 Query 111441 CGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 111499 | | ||| | |||||| |||||| ||| ||| || || || ||||||||||| Sbjct 797166 C---GACCCTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCACCGTAG 797110 Query 111500 GCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCA 111559 ||||| ||| || || || || || || | || | ||| | ||| | ||| Sbjct 797109 CAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCA 797050 Query 111560 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGC 111618 || |||||||| ||||| || || ||||| |||| || || || | ||| || | Sbjct 797049 ACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGA-C 796991 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGG 111678 ||| || | ||| ||||| ||| | |||||||| || | || ||| | |||||| || Sbjct 796990 CTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGG 796931 Query 111679 CTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGC 111735 ||| || |||| || | || || ||| ||| | |||| |||||||| || Sbjct 796930 CTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGATCGACATAGCGAGC 796871 Query 111736 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCC 111794 ||| ||| || || |||||||| |||| || || | ||| ||| || || || | Sbjct 796870 AGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGC 796811 Query 111795 GA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCAC 111853 || || ||| | | || | | | || | || || |||||||| |||||| | Sbjct 796810 GATGTAGGAG--CCAGTAGCACGAATACGGTGCACGTTCAGACCAATACCTCCAGCCATC 796753 Query 111854 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 111913 || ||||| ||||| | | ||||| | ||||| || | || ||| ||||| Sbjct 796752 TTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTC 796693 Query 111914 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 111973 | ||| | ||||||| |||| || || || |||||||| |||||||| || Sbjct 796692 ATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTG 796633 Query 111974 GGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAAT 112031 || | || || || | | | ||| ||||||| || ||||||||||||||| | Sbjct 796632 GGAGAGGCATG--TGTAAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCT 796575 Query 112032 CAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || || || || ||| || | | || ||||||| ||| | ||| || Sbjct 796574 CGATATCGTCACCCCAGATACCAACAGACACACGCATGATCATATGCTGAGG 796523 >seq1030 Length=250146 Score = 147 bits (162), Expect = 3e-30 Identities = 532/818 (65%), Gaps = 27/818 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 124203 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 124144 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 |||||||| || || | || || | | | | || |||| ||||| Sbjct 124143 AAGTCAAAGGGGTTGCTAGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACGAGGA 124089 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || ||||||| |||| ||| ||||| ||||| |||| ||| Sbjct 124088 GACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAGAAGGG 124029 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| ||||| || || || |||| | | |||||| || || || | | |||| Sbjct 124028 CACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGT 123969 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | ||||| | | | ||| | | ||| | || | || ||| || ||||| Sbjct 123968 CCTGGATCATCTGCTTGCTGGCACGACCCTTAAGGTGAGAGTGGAGGAGG--CA-GGCAA 123912 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||||||||||||||| || || || || || || |||||| || || |||| Sbjct 123911 AGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCA 123852 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| | |||| | || | ||| |||||||||||||| Sbjct 123851 TGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCT 123792 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841 | ||| || || |||| || || | ||| |||||| ||| ||| | | | |||| Sbjct 123791 CAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 123733 Query 122842 TTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAAC 122901 || ||||| | |||||||| || || || | || | ||||| | || | Sbjct 123732 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGG 123673 Query 122902 T-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCC 122960 | | ||| | | ||||| ||||| ||||||| | || || || ||| Sbjct 123672 TAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGA 123614 Query 122961 ATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAA 123019 ||| | | | ||| ||| | || | ||||||| | || || ||| ||||| | Sbjct 123613 ATGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAACGAGCCTCGGGGATCTGGA 123555 Query 123020 CCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAG 123078 |||| || | ||| | | | || ||||| ||||| ||||| || |||| ||| Sbjct 123554 CCTC-GCCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAG 123496 Query 123079 AATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGG---GTCTTCCAGTCG 123135 || || ||||||| | ||| || |||| || ||||| | ||||||||| Sbjct 123495 AAGGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTCG 123436 Query 123136 TCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | ||||| ||||| | ||||| || || |||||||| Sbjct 123435 TGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 123398 >seq1070 Length=1195525 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || |||||||| |||||| |||||| ||| | || || | Sbjct 734190 ATGGACGCATTGCCCCTCGATCCGGCCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 734249 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| | ||||| ||| | || ||||| || || Sbjct 734250 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTTTTCAACCATAACGAAT 734309 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 734310 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 734362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019195997600