Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq822 199 5e-46 seq1030 197 2e-45 >seq822 Length=1165972 Score = 199 bits (220), Expect = 5e-46 Identities = 1097/1724 (64%), Gaps = 53/1724 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 798278 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTGCGAAGGTAGTACATGCCGGTCTTGAGAC 798219 Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 | | |||||| | | || | ||||| || | |||| | || || | |||| Sbjct 798218 CAAGTTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTAGGGTCCTTCATG 798160 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||||| ||||| || || |||||| || || || || ||||| | || Sbjct 798159 TGGATGTTCAGTGACTGGGACTGGTCAATGAAGGCACCTCGGTCAGCGGCCATCTGAACG 798100 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || | | || ||||| |||||| | || || ||| | |||| | ||||| Sbjct 798099 ACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGCCTTGACATCAGCAGGGATG 798040 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 798039 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 797980 Query 118104 CAGAGACCAATCTTTTTGAGATCCT----CCACGAGATGCTTATTGACAACAACAAACTC 118159 || ||||| || | || |||| | || || | |||||||| ||||| Sbjct 797979 CACAGACCCATGTCGACAAGGTCCTTGAGCAACCAGGGG----TTGACAACCTGGAACTC 797924 Query 118160 ACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219 ||| |||||| |||| | | ||||| |||| ||||| ||||| |||||||| ||||| Sbjct 797923 ACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTT 797864 Query 118220 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 118279 |||| || || | || ||| || ||||| || || | ||| || |||||||||| Sbjct 797863 GCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGAT 797804 Query 118280 ACCCTTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCC 118337 ||| | | | | | | | | || || ||| |||||||| || | | || Sbjct 797803 ACCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTG 797746 Query 118338 CCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCA 118397 | | |||||| || |||||||||||||| | || || || || |||| || || Sbjct 797745 ACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAG 797686 Query 118398 TATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATT 118454 || || ||||| ||| |||| | ||||| || |||||| ||||| || || Sbjct 797685 TAGGGACCCTCCTCCTTGGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAGATG 797629 Query 118455 GTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCAC 118514 || || || || | || | | |||||| || || || | | || || Sbjct 797628 GTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAG 797570 Query 118515 AA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 118573 | || || |||| || || || || |||||||| ||||| || || || | ||| || Sbjct 797569 AGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGCATGTT 797510 Query 118574 AGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 || ||||| |||| || || || ||| ||||| | | | || || || Sbjct 797509 GCTGTTGCGAGC---CTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAGGTT 797453 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-TCTT 118689 | ||||||| ||| || || | ||| | | | || | | | | || || | Sbjct 797452 GCGAATAACAACCTGACTGACCTCGTGCAACTTCTTGAAGTCGTAGCAG-GCCTCATCGT 797394 Query 118690 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 118749 |||| | ||| || || | || || || || || |||| | ||| || Sbjct 797393 AGTTGATGAAGGAAGGCAGAGCTAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGG 797334 Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 || ||||| |||||||| ||||||| ||| ||||| |||||||| | |||||||| Sbjct 797333 CACAATACTCAATAATTTCAGTGCACAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTT 797274 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||| |||||| ||||||||||| |||||| | || | || ||||| || | Sbjct 797273 GGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCT 797214 Query 118870 GGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCC 118926 | | || ||||| || | ||| | | || | ||| || | | ||| || | | Sbjct 797213 GAGCCTCAAGAATGGCATACCAAAGCTTCTG-AGCCTTGATAGTCTTGCG-ACCCTTG-C 797157 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 |||| | |||||| ||| ||| || || || ||||| ||||| | || | ||| | Sbjct 797156 CCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGC 797097 Query 118987 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 119046 | || || | ||||| | || | ||| | ||| || ||||| |||||||| | Sbjct 797096 CAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAA 797037 Query 119047 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 119106 | || || |||||||| || || ||| || || || || | || || | || | Sbjct 797036 AAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGT 796977 Query 119107 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 119166 | || || | || | || || | || ||| | |||||| || || ||||| | | Sbjct 796976 GGTTCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGG 796917 Query 119167 CGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 | | | || | ||| | | ||| |||| | ||||| | |||||| ||| | Sbjct 796916 CAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGATCGACATAGCGAGCAGTGTTGTTGA 796860 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGA 119278 | ||||||||||| |||| | || | |||| || || || || ||| || ||| Sbjct 796859 AGACACGAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGC 796800 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 | | | || | | | ||| | || || ||||||||| || ||| ||| ||||| Sbjct 796799 C--AGTAGCACGAATACGGTGCACGTTCAGACCAATACCTCCAGCCATCTTGGAGATCAT 796742 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 || || | ||||| | ||||||| || || || ||| |||| | ||| | Sbjct 796741 GGCACAGGTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCGACCAA 796682 Query 119399 GAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 |||||| |||| ||| ||| || ||||||||||||||||| || || | || || Sbjct 796681 GAAGCAAGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATG 796622 Query 119459 GATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC 119500 || | | | ||| ||||||| || ||| ||||||||||| Sbjct 796621 --TGTAAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 796580 >seq1030 Length=250146 Score = 197 bits (218), Expect = 2e-45 Identities = 538/812 (66%), Gaps = 15/812 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 124203 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 124144 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| | | || | | | || | |||| ||||||||| Sbjct 124143 AAGTCAAAGGGGTTGCTAGCCTTGTAGACCTTCTCGTTG-CCAAGAGCGACGAGGAGACG 124085 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| ||||||| |||| ||| || || ||||| |||| ||| ||| Sbjct 124084 ATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAATTCATGCCGAGAAGGGCACA 124025 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || || |||| ||| ||||||| || || || | |||| | || Sbjct 124024 GGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTG 123965 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | || | || | || ||| || |||||| || Sbjct 123964 GATCATCTGCTTGCTGGCACGACCCTTAAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 123908 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||||||||| ||||| |||||||| || || |||||| ||| || |||||||| Sbjct 123907 AGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAG 123848 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 123847 ACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAAC 123788 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | ||||| |||| |||||||| ||||||||| | ||| | | ||| || Sbjct 123787 AGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGAT 123728 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | ||||| || ||| || || | ||||| || || | ||||| | | Sbjct 123727 GGCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGT 123668 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | || || |||||||| | || ||||| || || || ||| ||||| Sbjct 123667 TCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCGGAATGGAT 123608 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 123607 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTC-G 123550 Query 130383 CTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 | | ||| | | | || ||||| ||||| ||||| || |||| || || || Sbjct 123549 CCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAGGCA 123490 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCCAGTCGTCAAGA 130498 ||||| | | ||| ||| |||| | ||||| | |||||||||| ||| Sbjct 123489 AGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGATTGTTCCAGTCGTGGAGA 123430 Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| |||||||| | |||||| |||||||| Sbjct 123429 TCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 123398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422591652360