Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq822 257 2e-63 seq1030 149 7e-31 >seq822 Length=1165972 Score = 257 bits (284), Expect = 2e-63 Identities = 1149/1792 (64%), Gaps = 61/1792 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| ||||||| ||| | | ||||| || || || || || ||| Sbjct 796523 CCTCAGCATATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGACGATATCGAGCGAGTC 796582 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||||||||||| || ||||||| ||| | | | || || || | || || |||| Sbjct 796583 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTTACA--CATGCCTCTCCCACACTCT 796640 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || |||||| |||| ||||||| | ||| | ||||| | Sbjct 796641 TCAACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTCGATATGAAGGACG 796700 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | || ||||| | ||||| | | ||||| ||||| ||| ||||| Sbjct 796701 ACAGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTG 796760 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517 | |||||||| || || | || | | | || | | ||| || ||| || || Sbjct 796761 GAGGTATTGGTCTGAACGTGCACCGTATTCGTGCTACTGG--CTCCTACATCGCCGGTAC 796818 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || ||| ||| | || || |||| |||||||| || || ||| ||| || ||||| Sbjct 796819 CAACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 796878 Query 104578 TGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 ||| |||| | ||| ||| || || | || |||| || ||||| ||||| Sbjct 796879 TGTCGATCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 796938 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 | | ||| || | || |||||||| | || ||||| ||| | ||||||| || Sbjct 796939 CTCTGATGTCTTCGAATTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGTGC 796998 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| || || ||| ||| || ||||| || ||||| || |||||| | ||||| ||| Sbjct 796999 CCGTGACCTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAA 797058 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 || | ||| | || | || || || || ||||| ||| |||| | ||||| Sbjct 797059 CGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGTGA 797118 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTG 104872 |||||| || || |||||| ||| ||||| |||| ||| | | | | || ||| | Sbjct 797119 GGAGTTCGAGGCTCTTTACGAAAAATACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT- 797175 Query 104873 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 | || | || | | ||| | || ||||| || |||| || |||||||| | || | Sbjct 797176 CAAGGCTCAGAAGCTTTGGTATGCCATTCTTGAGGCTCAGACTGAGACTGGAAACCCTTT 797235 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||| ||||| || |||||||||| ||||| || |||||||| | || ||| Sbjct 797236 CATGCTCTACAAGGATGCCTGTAACCGCAAGAGCAACCAAAAGAACCTCGGCACCATCCG 797295 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 ||||| || || || || ||||| | || | | | | || ||| ||||| || Sbjct 797296 AAGTTCTAACCTGTGCACTGAAATTATTGAGTATTGTGCCCCTGACGAGGTCGCTGTCTG 797355 Query 105052 TAACCTCGCATCAATCGCTCTCCC---------CAAGTATG-TGGATCCAGAGACAAAGA 105101 ||||| || || | ||||| || ||| || | || || | | | || Sbjct 797356 CAACCTTGCCTCTCTAGCTCTGCCTTCCTTCATCAACTACGATGAGGCCTG---CTACGA 797412 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 | || | | || | ||||| || | | ||| | ||||| |||| Sbjct 797413 C--TTCA-----AGAAGTTGCACGAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGA 797465 Query 105162 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 | || || || ||||| || | ||||| || || ||| | ||||| | Sbjct 797466 TCATCGACGTGAACCACTACCCTGTCCCGGAGGCTCGCAACAGCAACATGCGCCACCGAC 797525 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT 105280 | |||||||||||||||||||| || || |||| ||| || || || ||| | || Sbjct 797526 CCATTGGTCTCGGTGTTCAGGGCCTTGCTGATGCTTTCCTTGCTCTG-CGCATGCCCTTC 797584 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || ||| || || |||| || || || |||||||| || ||||| || Sbjct 797585 GAGTCACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCC 797644 Query 105341 CTTGAGGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 || || || | || |||| ||| || ||||| || ||||| |||| | Sbjct 797645 CTCACTGCCTCCGTGC--AGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCT 797702 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 105458 |||| || || | || | || || || || |||||| | | || || | || Sbjct 797703 CTCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCT 797762 Query 105459 ACGACTGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 |||||||| ||| || || | | | ||||| | ||| | ||||||||||| || Sbjct 797763 GGGACTGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGTATCCGTAACAGTCTGCT 797820 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 | | ||||| ||||| || ||| ||| | || || |||| || || || ||||| || Sbjct 797821 CCTTGCTCCTATGCCTACTGCCAGTACCTCTCAGATTCTGGGCAACAACGAGTGCTTCGA 797880 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 |||||||| | |||||||| | | || | |||||| || ||||| | ||||||| Sbjct 797881 GCCCTACACCTCCAACATCTACCAGCGACGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAA 797940 Query 105637 CAAGCATCTCGTGG----ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 | || || | | ||||| || || ||||| |||||| | | ||||||| Sbjct 797941 ----CCCCTGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGA 797996 Query 105693 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTA 105752 | | ||| | | | |||||||||||| || ||| | || || ||| | | Sbjct 797997 ACCGCATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCTGATGTCA 798056 Query 105753 AGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAG 105812 || |||| || |||||||| || | | ||| || | |||||||| | Sbjct 798057 AGGCTCTGTATAAGACTGTTTGGGAGATTTCTCAGCGCCAGGTCGTTCAGATGGCCGCTG 798116 Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAAC 105870 | || ||| ||||||||| | |||| ||| |||| || |||| | || || Sbjct 798117 ACCGAGGTGCCTTCATTGACC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCTAC 798174 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGA 105929 |||| |||| || | ||||||| | | || | ||||| |||||||| || || | Sbjct 798175 GATGGGCAAGATCACCAGTATGCAC-TTTGCAGGCTGGAAACTTGGTCTCAAGACCGGCA 798233 Query 105930 TGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981 |||| ||||| || | |||| || || |||||||||| | |||| Sbjct 798234 TGTACTACCTTCGCACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 798285 >seq1030 Length=250146 Score = 149 bits (164), Expect = 7e-31 Identities = 353/522 (68%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 |||||||| || ||| | |||||||| |||||| | |||| ||||| | || | | | Sbjct 123398 TGGACTGCCGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAATCGCCTGACT 123457 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | |||| || ||| | ||||||| || ||||| |||| || ||||| ||| Sbjct 123458 GCCGATGAGCAGTTCTTCGTCTCTCACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATT 123517 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| || | | || || ||||| || |||| | || || | | Sbjct 123518 GTCAACGAGAACCTCGTTGAGCGATTCAGTGGCGAGGTCCAGATCCCC-GAGGCTCGTTG 123576 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | ||| ||||| ||| |||| Sbjct 123577 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCATTCCGAGACCTACTCCCTTCTCA 123635 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 94734 | |||| || || ||||| || || ||| | | ||||| | ||||| | || Sbjct 123636 TTGACACCTACATCAAGGAGCCCGCCCAGC-GAACCTACCTCTTCAACGCCATTGAGACC 123694 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCG 94793 |||| || || | |||||| || || ||||| || ||| | | | || | | | Sbjct 123695 ATTCCTTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCC 123754 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 | ||||||| |||| ||| | || || || ||||||||||||||||||| ||| | Sbjct 123755 T-CCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGC 123813 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 ||| | |||| | |||||||||||||| ||||||||||| || || ||||||||| Sbjct 123814 CTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAA 123873 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| ||||||||||| ||||| |||||| || ||||| Sbjct 123874 CGAGCTCATCTCTCGTGATGAGGGTCTCCACACTGACTTTGC 123915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248908770440