Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq678 176 1e-38 seq486 149 2e-30 seq1496 105 2e-17 >seq678 Length=783410 Score = 176 bits (194), Expect = 1e-38 Identities = 449/676 (66%), Gaps = 17/676 (3%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || ||||| |||||| |||| || || |||| ||| | || ||||| Sbjct 623415 GATATCATTGCCAACGATCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 623474 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || |||| ||| || || | || || Sbjct 623475 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCCCAGAACACT 623534 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | |||||| | ||||| | |||| || || Sbjct 623535 GTCTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCGCCGATCCTGAGG--TC----CAG 623588 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | || | || || || || || | | || | | ||| |||| ||| || |||| Sbjct 623589 GCCGACATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCGTTATC 623645 Query 349496 GAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||||||| | || || || || || || || ||||| || || || | ||| | Sbjct 623646 GAGGTTGAGTTCAAGGGCGAGACCAAGACC-TTCACCCCCGAGGAGATCTCCGCCATGAT 623704 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | ||||| | || | || || || || | | ||||| Sbjct 623705 CCTCACCAAGATGCGTGAGACCGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCTGT 623764 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | |||| || || ||||| || || ||| | |||||| || || || |||||||| Sbjct 623765 TGTTACCGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCTGGTCT 623824 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | || ||||| |||| || || || || |||||||| || ||||| || Sbjct 623825 CATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTA 623884 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | ||| || || | || || || ||| | |||||||| Sbjct 623885 CGGTCTCGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGG 623944 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 623945 TACCTTCGATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGC 624004 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||||| || || | ||||| || || || || || ||||| || || || ||||| Sbjct 624005 CGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTTAA 624064 Query 349915 AGAATTTAAGCGTCAA 349930 || || |||||| || Sbjct 624065 TGAGTTCAAGCGTAAA 624080 Score = 98.7 bits (108), Expect = 3e-15 Identities = 102/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||| ||||| ||||||| ||| || || | ||||||||||| ||||| || || Sbjct 336114 CGTGGTACACCGAGTGTAACGTTC---TTGGACGACACACCAGCAAAATGGAAGGTGTTT 336170 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| |||||||| || ||||| || || | ||| ||||||||||| Sbjct 336171 AGTGTCATCTGAGTAGCAGGCTCACCGATAGACTGTGCAGCCAGAACACCAACCATTTCA 336230 Query 377578 CCAGGATTGACAA 377590 ||||| || |||| Sbjct 336231 CCAGGGTTCACAA 336243 Score = 98.7 bits (108), Expect = 3e-15 Identities = 188/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| || ||||| |||| | ||| || ||||| Sbjct 336875 ATCTTCCAGAGCCTTGACCAATCGTCGCTGGATGTAACCTGTTTCAGCAGTCTTGACTGC 336934 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| || || | || ||||| Sbjct 336935 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTGGGGGTAAG 336994 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | || || | || | || || | ||| | || || Sbjct 336995 ACCACGGAGGTAGGAGTTCTCGACGAAGCCACGGGCCTCGGGTGAGTAATCGTCCTTGGT 337054 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 ||||||||| ||| |||| || || || | ||||| || || || ||||| | || Sbjct 337055 GAAATGAGGTAGTGTGCGATACTTGAAACCGAAAGGAATACGCTTGCCTTCAACGATTTG 337114 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| ||| |||| |||||| Sbjct 337115 CTGACCGACAAGCGCAG---TCATCTGAGAAATATT 337147 >seq486 Length=637844 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| |||||||||||||| || ||||| || | Sbjct 83305 TTTGCATACCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGT 83364 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| ||||| || || || || | ||||||||||| Sbjct 83365 AATCAGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGAT 83424 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || || || | || || | Sbjct 83425 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAG 83484 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| | || || || || |||||||| Sbjct 83485 ACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 83539 Score = 145 bits (160), Expect = 2e-29 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || ||||| || || || || || || || Sbjct 82799 CATACCACCACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTC 82858 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || |||||||| || ||||| ||||| || || || ||||| || Sbjct 82859 GGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGG 82918 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || || ||||| || ||| || ||||||||||| | ||| |||| | Sbjct 82919 AGGAATACCCTCCTTGTCTTGAATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 82977 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 82978 CGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 83029 Score = 141 bits (156), Expect = 3e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| ||||| || || ||||| || | Sbjct 83023 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGT 83082 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || || |||||||| || ||||||||||| || || ||||||| Sbjct 83083 AGTCGGCGAGGGTTCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGAT 83142 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || ||||| || || | || ||||| || || | ||| |||| Sbjct 83143 CAGGAGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGATG 83202 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || || | || || || || ||||| || || Sbjct 83203 ACTCAACCTCGAGAGTGATAGTTTTGCCAGTGAGTGTCTTGAC 83245 Score = 125 bits (138), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || ||||| ||||| || || || || || || | || || |||||| Sbjct 82590 AGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 82649 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| ||||||||||||||||| || || || || || ||| Sbjct 82650 TCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCC 82709 Query 140646 TGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 ||||| || ||| || || || || || | ||| | || || ||||| || | || Sbjct 82710 TGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGT 82768 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||| || || || || ||||||||||| Sbjct 82769 CTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 82801 >seq1496 Length=1355525 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 510738 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 510679 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| ||||| Sbjct 510678 GCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGG 510619 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 510618 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 510559 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 510558 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 510508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515222735444693