Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq822 241 1e-58 seq523 91.5 2e-13 >seq822 Length=1165972 Score = 241 bits (266), Expect = 1e-58 Identities = 528/785 (67%), Gaps = 26/785 (3%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT 53238 ||||||| || | ||||||| || | | |||||| |||||||| | ||| || Sbjct 796522 GCCTCAGCATATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGACGATATCGAGCGAGT 796581 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 | ||||| ||| || | ||| | || | |||||| || ||| | || || || || Sbjct 796582 CTTGGAGACATACAACCTGATGTCCAGCAAATTCTTTACACATGCCTCTCCCACACTCTT 796641 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 |||||||||||| ||| || || |||| |||||| |||| | |||||||| || Sbjct 796642 CAACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTCGATATGAAGGACGA 796701 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 | || || ||||||||||| || |||||| |||||| ||||||||| | | || Sbjct 796702 CAGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 796761 Query 53419 TGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACG 53476 ||||| ||| | || ||| | | | | ||||| | ||| | ||| || || Sbjct 796762 AGGTATTGGTCTGAACGTGCACCGTA--TTCGTGCTACTGGCTCCTACATCGCCGGTACC 796819 Query 53477 AACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 ||||| || | || | || |||||||| || |||||||||||||| || || || Sbjct 796820 AACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 796879 Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 ||| | |||||||| ||||| || | || ||||||||||||||||| |||||| Sbjct 796880 GTCGATCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCAC 796939 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 | || | | || || || || || || ||| || ||| | || ||| | || | Sbjct 796940 TCTGATGTCTTCGAATTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGTGCC 796999 Query 53657 CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 ||||||||||| || || ||||| || || || || ||| | || || ||| || Sbjct 797000 CGTGACCTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAAC 797059 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGA 53775 | || ||| ||||||||||| ||||||||||| |||||| | | || ||||||||| Sbjct 797060 GGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGTGA 797118 Query 53776 GGAGT---------TTAACGAGATGTATCGGACGTA-CGCAGTTCAGGGCCGCTACAAGA 53825 ||||| || |||| | || || | | ||| |||| ||| | Sbjct 797119 GGAGTTCGAGGCTCTTTACGAAAAATACGAGAAGGAGGGCA----AGGGTCGC------A 797168 Query 53826 AGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAA 53885 ||| ||||||| | || | ||| |||| || || || ||| ||||| |||| Sbjct 797169 AGACTATCAAGGCTCAGAAGCTTTGGTATGCCATTCTTGAGGCTCAGACTGAGACTGGAA 797228 Query 53886 CGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCG 53945 || | |||| |||||||||| | ||| ||||||||||| |||||| ||||| Sbjct 797229 ACCCTTTCATGCTCTACAAGGATGCCTGTAACCGCAAGAGCAACCAAAAGAACCTCGGCA 797288 Query 53946 TCATC 53950 |||| Sbjct 797289 CCATC 797293 Score = 107 bits (118), Expect = 2e-18 Identities = 558/866 (64%), Gaps = 66/866 (8%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||| | ||||| || | | ||||| | ||| ||||||||| | ||||| Sbjct 797411 GACTTCAAGAAGTTGCACGAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATC 797470 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| ||| ||||||| | ||| ||||| |||| | || ||||| ||||| Sbjct 797471 GACGTGAACCACTACCCTGTCCCGGAGGCTCGCAACAGCAACATGCGCCACCGACCCATT 797530 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTCGACT 55274 | ||||||| |||||| | || || ||| | ||||| | |||||||||| | Sbjct 797531 GGTCTCGGTGTTCAGGGCCTTGCTGATGCTTTCCT--TGCTCTGCGCATGCCCTTCGAGT 797588 Query 55275 CGGAACCT--GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGC 55331 | | || ||||| || | ||| || | |||||| || | ||||||| || || | Sbjct 797589 C--ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATCTACCACGCTGCCC 797645 Query 55332 TCGAGGAGTC-GTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCG 55390 || | || ||| || ||||| | | ||||| ||||| || ||| | || Sbjct 797646 TCACTGCCTCCGTG-CAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTCT 797704 Query 55391 CCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG 55444 || || |||| | ||||||||||| | ||| | |||| ||||||| | | Sbjct 797705 CCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGG 797764 Query 55445 ---TTTGACA-------AGTTGAAG-CATGACATTCACTTGTGGGGCCTACGCAACTCCC 55493 | || | || |||| || |||| ||| || | || ||| | Sbjct 797765 GACTGGGAGACTCTTCGAGAGGAAGTCAAGACA--CAC------GGTATCCGTAACAGTC 797816 Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553 ||||| | || || ||||| || || || ||||||| |||||||||||||| | Sbjct 797817 TGCTCCTTGCTCCTATGCCTACTGCCAGTACCTCTCAGATTCTGGGCAACAACGAGTGCT 797876 Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613 ||||||| ||||| |||||||||||| ||| || ||| || |||||||| | Sbjct 797877 TCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTCGCTGGTGAGTTCCAGGTTG 797936 Query 55614 TCAACAAGCACCTCGT----CAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--A 55667 ||||| ||| || ||||||||| | || |||| ||| | | Sbjct 797937 TCAACC----CCTGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGT--CCGATGCTA 797990 Query 55668 TCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCT- 55720 | |||| || || |||| ||| || ||| | ||||| || | || ||| Sbjct 797991 TGAAGAACCGCATCATTGCTGAGAATGGT---TCCATTCAGAACATTCCCAACATCCCTG 798047 Query 55721 CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA---AGAGTCTGATT 55777 ||| | |||||| | || ||| || ||||||||| | ||| || ||| || Sbjct 798048 CTGA-TGTCAAGGCTCTGTATAAGACTGTTTGGGAGATTTCTCAGCGCCAG-GTCG--TT 798103 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 | ||| ||||| || ||||| | ||| |||||||||||||| ||||||||| |||| Sbjct 798104 CAGATGGCCGCTGACCGAGGTGCCTTCATTGACCAGTCCCAGTCACTGAACATCCACATG 798163 Query 55838 GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTC 55897 || | ||| | ||| |||| | | | ||||||||| || ||||| || ||| Sbjct 798164 AAGGACCCTACGATGGGCAAGATCACCAGTATGCACTTTGCAGGCTGGAAACTTGGTCTC 798223 Query 55898 AAGACGGGTATGTACTATCTGCGGAC 55923 ||||| || |||||||| || || || Sbjct 798224 AAGACCGGCATGTACTACCTTCGCAC 798249 >seq523 Length=179213 Score = 91.5 bits (100), Expect = 2e-13 Identities = 199/298 (67%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 || ||| |||||| |||| || | ||||| ||||| ||||| || || || | || Sbjct 138669 CAGACGAGTGAAGGTGTAACGAGGACTGGCAGCATCAGATCCACCGGCAAGTCGAGAACC 138728 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || | |||| ||| || || ||||| |||||| | || ||||||||||| || | Sbjct 138729 GAAGTTTCCACTGGGTTCTAGACAGTTGATGTTGTTTGAACCGACGAAATTCTGGGCTAG 138788 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | || || ||| ||| | ||||||||| || || || ||||| || | || Sbjct 138789 GCCAATGATAGTCTGCTGGAGAGACTGTTCACCGTGATGGTAGGCAGTCTGTTCGGAGAC 138848 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || ||||| | | |||||| |||| | || ||| |||||| ||||| || Sbjct 138849 ATAACCAGCCAATTCAACGACCTTCTTGTCTTTGACCAAGTTTCTCTTGAAGCAGGCATA 138908 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 || ||||| ||||| || || || || |||| ||| || || || ||| || Sbjct 138909 TATGACCTTACGCTGACCAGGCTTGAAGCCATCCAGTACGGACGGGATGGATCGCATG 138966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204843633800