Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq822 295 8e-75 seq486 176 5e-39 seq1496 156 5e-33 seq1259 120 3e-22 seq1030 104 3e-17 >seq822 Length=1165972 Score = 295 bits (326), Expect = 8e-75 Identities = 939/1434 (65%), Gaps = 54/1434 (4%) Strand=Plus/Minus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || |||||| || ||| | || | ||| | ||||| ||||| || |||| Sbjct 797928 AACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCG 797869 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || || ||||||| || || || || ||||| || | | | ||| || Sbjct 797868 TTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTA 797809 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAA---TCTGA---CCAAAAATCAACCCCA 80529 || | ||||| |||||| ||||| || | | || | ||| | ||| | Sbjct 797808 CGGATACCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAG----A 797753 Query 80530 ACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587 ||| |||| |||||||||| ||| | ||| ||||| || || ||||| ||| || Sbjct 797752 GGGCT-TGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGA 797694 Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCA-TAAGGGCCGCGTGA 80646 | || ||| || |||||| ||||||||||| |||| || | ||||| ||||| Sbjct 797693 AGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGG 797635 Query 80647 TAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAG 80706 || ||| ||| |||| |||||| | | || |||| || ||||| | || | Sbjct 797634 TAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 797575 Query 80707 CCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC 80766 | || | ||| | ||||| ||||||||||| |||| | || || ||||||||| Sbjct 797574 CGCAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGC 797515 Query 80767 TTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAG 80825 |||| | | || |||||||| | ||||| ||| ||||||| |||||| Sbjct 797514 ATGTT-GCTGTTGCGAGCCTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAG 797456 Query 80826 GTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTT 80885 |||||| |||||||| | | || || || | |||| |||||| | | || | | Sbjct 797455 GTTGCGAATAACAACCTGACTGACCTCGTGCAACTTCTTGAAGTCGTAGCAGG-CCTCAT 797397 Query 80886 CACAA---ATGCCGGAAGGCTCAGG----GACGCCAGATTGCACACGGCCACCTCTTCAG 80938 | | ||| ||||||| || || || || ||||| || || ||||| |||| Sbjct 797396 CGTAGTTGATGAAGGAAGGCAGAGCTAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 797337 Query 80939 CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTT 80996 | | |||| | ||||| ||||||| |||||| ||| || || || ||||| Sbjct 797336 GGGCACAATACTCAATAATTTCAGTGCACAGGTTAGAA--CTTCGGATGGTGCCGAGGTT 797279 Query 80997 TTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTC 81056 || ||||| |||| ||| || || ||||||||| |||| | ||| | || ||||| Sbjct 797278 CTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTC 797219 Query 81057 GACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTT 81116 ||| | || || ||||| | ||||| || | ||||||| |||||| || Sbjct 797218 AGTCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTGCGACCCTT 797159 Query 81117 GCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGA 81175 ||| || | | || || ||||| | ||||||| |||||| | ||| | | || Sbjct 797158 GCCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCACCGTAGCAGT-CGGCGA 797100 Query 81176 GGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCA 81235 || | ||||||||||| ||||||||||| |||||| || || || ||| ||||| Sbjct 797099 GGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCA 797040 Query 81236 TGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCAC 81295 | ||| ||||||||||| |||||| ||||||||| ||| || ||||||| | || Sbjct 797039 TAAAAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTAC 796980 Query 81296 CCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACA 81355 | ||||| || | || || || || | || || | ||||| ||||| || || | Sbjct 796979 CGTGGTTCTTTCGGAGATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGA 796920 Query 81356 CGGCGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGT 81409 ||| | | || | |||| ||||||||| | ||| || || ||||| || Sbjct 796919 TGGCAAAAGCACCGGGTCGCTTG---TTGCCACCCTGATCGACATAGCGAGCAGTGTTGT 796863 Query 81410 TAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCG 81469 | || ||||| | |||||| | | || | || |||||| ||||| |||| | Sbjct 796862 TGAAGACACGAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGG 796803 Query 81470 ACCCCTTGGCGCG--CACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAAT 81527 | || | || || || ||| || ||||| || || || | | ||| || || Sbjct 796802 AGCCAGTAGCACGAATACGGTGCACGTT--CAGACCAATACCTCCAGCCATCTTGGAGAT 796745 Query 81528 CTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAG 81587 | ||||| || | || || || || ||||| || || || | ||||| || | Sbjct 796744 CATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCGAC 796685 Query 81588 CAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG-----CCGGCATTGAACAGTGTTGGG 81642 |||||| || ||||| || |||| |||| || || ||||| ||||| || Sbjct 796684 CAAGAAGCAAGATGACAATTG-GGGC----TGAGGGGTACCAGCGTTGAAGAGTGTGGGA 796630 Query 81643 GTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATA 81702 | || || | || | | | |||||||||| || || ||| ||| || ||| Sbjct 796629 GAGGCATGTGTAAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATA 796570 Query 81703 TCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 |||||||| ||||| | || |||||||| | ||| | ||| ||| |||| Sbjct 796569 TCGTCACCCCAGATACCAACAGACACACGCATGATCATATGCTGAGGCCGCTCG 796516 >seq486 Length=637844 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || ||||| ||||| ||||| |||||||||||| |||| ||| | Sbjct 83245 GTCAAGACACTCACTGGCAAAACTATCACTCTCGAGGTTGAGTCATCCGATACCATCGAC 83186 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| || ||||| || |||||||| || || Sbjct 83185 AATGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGCCTGATC 83126 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| ||||| | || ||||| || ||||| || | || |||||| Sbjct 83125 TTTGCTGGCAAGCAACTTGAGGACGGCCGAACCCTCGCCGACTACAACATTCAGAAGGAA 83066 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| ||| | || || || ||||| Sbjct 83065 TCTACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 83031 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| |||||||| || || |||||| Sbjct 83029 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 82970 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||| || ||||| ||||||||||| |||||||| || || Sbjct 82969 GATACCATTGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATCAA 82910 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||| | || || || | ||||| || Sbjct 82909 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAAC 82850 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || | || | |||||||| ||||| Sbjct 82849 ATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGTCTTCGTGGTGG 82803 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 82801 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACGATCACCCTTGAGGTCGAGTCCAGT 82742 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| || || || || ||| Sbjct 82741 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 82682 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || || ||||||||||| || || |||| ||| ||||| ||| ||||| || Sbjct 82681 CAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGAGC-GACTACAA 82623 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || ||||| || || || | || |||||||| || || Sbjct 82622 CATCCAGAAGGAGTCAACTCTCCACCTCGTTCTCCGACTTCGCGGCGGCCA 82572 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| | ||||||||||| || ||||| ||||||||||| Sbjct 83542 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCT 83483 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | || | ||| | || ||||||||||||||||| || || || || Sbjct 83482 TCCGACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGAT 83423 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||| | ||||| || || || || || ||||| | || ||||| | || || Sbjct 83422 CAGCAACGTTTGATTTTCGCCGGCAAACAGCTTGAGGACGGCCGCACCCTCTCTGATTAC 83363 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| || |||||||| || || | || || || ||||| Sbjct 83362 AACATTCAGAAGGAGTCTACTCTTCACCTTGTTCTCCGCCTCCGTGGTGG 83313 >seq1496 Length=1355525 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 510508 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 510567 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 510568 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 510627 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 510628 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGC-GACTACAA 510686 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 510687 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 510734 >seq1259 Length=620669 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 152542 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 152483 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 152482 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 152423 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| ||||| |||| || || || | ||||| || |||| ||| Sbjct 152422 ATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 152363 Query 27595 G 27595 | Sbjct 152362 G 152362 >seq1030 Length=250146 Score = 104 bits (114), Expect = 3e-17 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | || | || || |||| |||||| Sbjct 123710 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 123769 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || || || ||| || || || ||||| || | || ||||| ||| Sbjct 123770 CTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTC 123829 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| || ||| | || || |||||||| |||||||| Sbjct 123830 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGT 123889 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 || ||||| |||||| || ||||| Sbjct 123890 GATGAGGGTCTCCACACTGACTTTGC 123915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298772796720