Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq486 132 4e-26
>seq486
Length=637844
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || ||||||||||| | || ||||| || || || | ||
Sbjct 83540 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTC 83481
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || || | ||||| || ||||| ||||| || ||||| || ||||||||
Sbjct 83480 CGACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 83421
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| ||||| || | |||||||||||| | || ||| | ||| | || ||||||||
Sbjct 83420 GCAACGTTTGATTTTCGCCGGCAAACAGCTTGAGGACGGCCGCACCCTCTCTGATTACAA 83361
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| |||||||| || | || | ||| | || | || ||||| ||
Sbjct 83360 CATTCAGAAGGAGTCTACTCTTCACCTTGTTCTCCGCCTCCGTGGTGGTAT 83310
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || || ||| | |||||||| ||||| || | |||
Sbjct 83029 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 82970
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || || || ||||||||||| || || || || |||||||||
Sbjct 82969 GATACCATTGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATCAA 82910
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| ||| | || ||| | || ||||||| ||||||
Sbjct 82909 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAAC 82850
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||| || ||| | || |||||| | ||| | || ||||| ||
Sbjct 82849 ATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGTCTTCGTGGTGGTAT 82800
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/224 (68%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053
||| | || || || || || ||||| |||| ||||| || || || | ||||| |
Sbjct 83251 ATAGTCGTCAAGACACTCACTGGCAAAACTATCACTCTCGAGGTTGAGTCATCCGATACC 83192
Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113
|| || | ||||| ||| || || ||||| || || || || || ||||| |||||
Sbjct 83191 ATCGACAATGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGC 83132
Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173
| || | || ||||| ||| | || ||| | ||| | |||| |||||||||||
Sbjct 83131 CTGATCTTTGCTGGCAAGCAACTTGAGGACGGCCGAACCCTCGCCGACTACAACATTCAG 83072
Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| || ||| | ||| | || | || | || ||||| ||
Sbjct 83071 AAGGAATCTACCCTTCATCTCGTCCTCCGCCTCCGTGGTGGTAT 83028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434909533101120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |