Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq486 187 6e-42 seq1496 176 1e-38 seq1259 143 6e-29 seq822 114 3e-20 >seq486 Length=637844 Score = 187 bits (206), Expect = 6e-42 Identities = 174/221 (79%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || ||||| ||||| ||||| || |||||||| || || ||||| Sbjct 82581 CGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 82640 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||||||||| || ||||||||||| ||||| || ||||| || | || Sbjct 82641 CGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCC 82700 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| |||||||| ||||| |||||| | || ||||| || Sbjct 82701 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGG 82760 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| ||||||||||| || || | |||||| Sbjct 82761 GTGATCGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 82801 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || || || || || ||||| || || || ||||| | || || Sbjct 83046 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCGTCC 83105 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| || ||||| ||||| || || |||||||| | || ||||||||| Sbjct 83106 TCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCC 83165 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || |||||||| || || ||||||||||||||||| || Sbjct 83166 TGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGAGTGATAGTT 83225 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 83226 TTGCCAGTGAGTGTCTTGAC 83245 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| ||||| || || ||||| ||||| | ||||| | || || Sbjct 83328 AGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCC 83387 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| ||||| || | ||||| || || || || | || ||||||||| Sbjct 83388 TCAAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCC 83447 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| || ||||||||||||||||| ||| Sbjct 83448 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTC 83507 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 83508 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 83539 >seq1496 Length=1355525 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || ||||| | |||||| Sbjct 510719 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 510660 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || |||||||| || | || ||||||||| Sbjct 510659 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 510600 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 510599 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 510540 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 510539 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 510505 >seq1259 Length=620669 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | |||||||| |||||||| || |||||||| Sbjct 152364 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGCTTACCAGCGAAGATC 152423 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || |||||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 152424 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 152483 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 152484 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 152542 >seq822 Length=1165972 Score = 114 bits (126), Expect = 3e-20 Identities = 189/269 (70%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||||||||||||||| | | | |||||| ||||| ||||| || |||| Sbjct 797281 GTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGT 797222 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||||| |||||| | |||||| || |||||||| ||| || || |||||| | Sbjct 797221 CTCAGTCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTGCGACC 797162 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || || || |||||||| |||| ||| || ||||||| ||| || ||| || | Sbjct 797161 CTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCACCGTAGCAGTCGGC 797102 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-ACTCGT 178330 ||| || || ||| |||||||| | || |||| | |||| |||| ||| || || Sbjct 797101 GAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTT--TTCAACACGC 797044 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 ||||| || || |||| | |||| | ||| Sbjct 797043 TTCATAAAAAGATCAGGGATCCAAAGGGC 797015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159127776983315