Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq486 187 6e-42
seq1496 176 1e-38
seq1259 143 6e-29
seq822 114 3e-20
>seq486
Length=637844
Score = 187 bits (206), Expect = 6e-42
Identities = 174/221 (79%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| || || ||||| ||||| ||||| || |||||||| || || |||||
Sbjct 82581 CGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 82640
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||||||||||||||| || ||||||||||| ||||| || ||||| || | ||
Sbjct 82641 CGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCC 82700
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| ||||| |||||||| ||||| |||||| | || ||||| ||
Sbjct 82701 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGG 82760
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||||||||| ||||||||||| || || | ||||||
Sbjct 82761 GTGATCGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 82801
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || ||||| || || || || || ||||| || || || ||||| | || ||
Sbjct 83046 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCGTCC 83105
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| || ||||| ||||| || || |||||||| | || |||||||||
Sbjct 83106 TCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCC 83165
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| || || || |||||||| || || ||||||||||||||||| ||
Sbjct 83166 TGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGAGTGATAGTT 83225
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 83226 TTGCCAGTGAGTGTCTTGAC 83245
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||||||||| ||||| || || ||||| ||||| | ||||| | || ||
Sbjct 83328 AGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCC 83387
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||| ||||| ||||| || | ||||| || || || || | || |||||||||
Sbjct 83388 TCAAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCC 83447
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||| ||||| || ||||||||||||||||| |||
Sbjct 83448 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTC 83507
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| || || | ||||||
Sbjct 83508 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 83539
>seq1496
Length=1355525
Score = 176 bits (194), Expect = 1e-38
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || ||||| | ||||||
Sbjct 510719 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 510660
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || |||||||| || | || |||||||||
Sbjct 510659 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 510600
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || || ||||| || |||||||||
Sbjct 510599 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 510540
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 510539 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 510505
>seq1259
Length=620669
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | || || | |||||||| |||||||| || ||||||||
Sbjct 152364 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGCTTACCAGCGAAGATC 152423
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || |||||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 152424 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 152483
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || ||
Sbjct 152484 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 152542
>seq822
Length=1165972
Score = 114 bits (126), Expect = 3e-20
Identities = 189/269 (70%), Gaps = 4/269 (1%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||||||||||||||| | | | |||||| ||||| ||||| || ||||
Sbjct 797281 GTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGT 797222
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||||| |||||| | |||||| || |||||||| ||| || || |||||| |
Sbjct 797221 CTCAGTCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTGCGACC 797162
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272
|| || || |||||||| |||| ||| || ||||||| ||| || ||| || |
Sbjct 797161 CTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCACCGTAGCAGTCGGC 797102
Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-ACTCGT 178330
||| || || ||| |||||||| | || |||| | |||| |||| ||| || ||
Sbjct 797101 GAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTT--TTCAACACGC 797044
Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGC 178359
||||| || || |||| | |||| | |||
Sbjct 797043 TTCATAAAAAGATCAGGGATCCAAAGGGC 797015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159127776983315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |